BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN00393 (UTR included)
(1480 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01038B1C07 741 0.0
>BF01038B1C07
Length = 741
Score = 741 bits (374), Expect = 0.0
Identities = 380/382 (99%)
Strand = Plus / Plus
Query: 566 cgggccgaatgctggccagccaagaggtttcgcctttgtcacatataagttgaaacaaga 625
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cgggccaaatgctggccagccaagaggtttcgcctttgtcacatataagttgaaacaaga 419
Query: 626 tgccataaaagccatggcctcactcaatggacagctccttggatctaaaaggatttgtgt 685
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 420 tgccataaaagccatggcctcactcaacggacagctccttggatctaaaaggatttgtgt 479
Query: 686 caaatatgccaagaacacatcagatgaacaggaaaagccaaaaccagaatttggtattgc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 caaatatgccaagaacacatcagatgaacaggaaaagccaaaaccagaatttggtattgc 539
Query: 746 agcactgtccggtgttaagccagagtttaaacttagcaaaaaaacggccatacagtctat 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agcactgtccggtgttaagccagagtttaaacttagcaaaaaaacggccatacagtctat 599
Query: 806 agaggcgaaactaaagatgatggaaaatatgaaagctggtgatgactttgtcatcaacag 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agaggcgaaactaaagatgatggaaaatatgaaagctggtgatgactttgtcatcaacag 659
Query: 866 gttggccgctaatgaagctccagtgatcactcaatatcaaacaaaacaacatcagccccc 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gttggccgctaatgaagctccagtgatcactcaatatcaaacaaaacaacatcagccccc 719
Query: 926 aaataggactattagctcattc 947
||||||||||||||||||||||
Sbjct: 720 aaataggactattagctcattc 741
Score = 404 bits (204), Expect = e-112
Identities = 204/204 (100%)
Strand = Plus / Plus
Query: 203 atctttttttagacgttcgatttcttgattttatattacaatgttgtgttttgaaatatc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctttttttagacgttcgatttcttgattttatattacaatgttgtgttttgaaatatc 60
Query: 263 gtaactgtgaataaatgttacttcatattttggtgtagctgtacgtcaaataccaatcga 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtaactgtgaataaatgttacttcatattttggtgtagctgtacgtcaaataccaatcga 120
Query: 323 tacttaatctccattgccttcttatacatctaacttattttaaaagtcccacaaaaagca 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tacttaatctccattgccttcttatacatctaacttattttaaaagtcccacaaaaagca 180
Query: 383 ctttttaagatggaggatgcctcg 406
||||||||||||||||||||||||
Sbjct: 181 ctttttaagatggaggatgcctcg 204
Score = 172 bits (87), Expect = 1e-42
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 479 gttgccgttacacttagaaccaatgcactcagaacagacttgcgacaaacggctgtggat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gttgccgttacacttagaaccaatgcactcagaacagacttgcgacaaacggctgtggat 263
Query: 539 cgggaacctggatctgagagtcaatga 565
|||||||||||||||||||||||||||
Sbjct: 264 cgggaacctggatctgagagtcaatga 290
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 209,411
Number of extensions: 4417
Number of successful extensions: 4417
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4417
Number of HSP's successfully gapped: 3
Length of query: 1480
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1463
Effective length of database: 8,119,229
Effective search space: 11878432027
Effective search space used: 11878432027
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)