BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN00562 (UTR included)
(2498 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01045B2D05 934 0.0
BF14_1693_C1 168 3e-41
>BF01045B2D05
Length = 723
Score = 934 bits (471), Expect = 0.0
Identities = 512/524 (97%), Gaps = 3/524 (0%)
Strand = Plus / Plus
Query: 1515 aataaaagcattgataa-agatacgaaacacaaaaacaagaagaaaaataagaaaacatc 1573
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 aataaaagcattgataacnnatacgaaacacaaaaacaagaagaaaaataagaaaacatc 75
Query: 1574 aaagaaatcagaaaacacaagtgaagtgaaccccaatgcaattactaacaaagattcaga 1633
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 aaagaaatcaggaaacgcaagtgaagtgaaccccaatgcaattactaacaaagattcaga 135
Query: 1634 ctccgagcacgaatctgatgatgagatgcactcggacaatgaggaagaaaataaaaaaac 1693
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 136 ctccgagcacgaatctgatgatgagatgcactcggagaatgaggaagaaaataaaaaaac 195
Query: 1694 tctcagcactgatcctgttgaagaaagttccgatgaagaagaagctcccaacaagaaaga 1753
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tc--agcactgatcctgttgaagaaagttccgatgaagaagaagctcccaacaagaaaga 253
Query: 1754 agcaagtaaagaaaagaaagaagatgaagtacatcaggatacagaggacgaaatacaaag 1813
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 254 agcaagtaaagaaaagaaagaagatgaagtacatcaggacacagaggacgaaatacaaag 313
Query: 1814 aactatatttgtgggcaacgtacccttcagcaccaagtgtaagaaggagctgaagaaaat 1873
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 314 aactatatttgtgggcaacgtccccttcagcaccaagtgtaagaaggaactgaagaaaat 373
Query: 1874 tttcaaccagtatggacaaattgaaactgttcggattcggacggtgccggtcaaggatgc 1933
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 374 tttcaaccagtatggacaaattgaaactgttcggattcgaacggtgccggtcaaggatgc 433
Query: 1934 acgggtgacgccgaagatggctgtcatcaagaacgagctccatccagaccgcactactgt 1993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 acgggtgacgccgaagatggctgtcatcaagaacgagctccatccagaccgcactactgt 493
Query: 1994 caatgcttacatcaagtttgctgatgccgcctccgtcagtaagg 2037
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 caatgcttacatcaagtttgctgatgccgcctccgtcagtaagg 537
Score = 285 bits (144), Expect = 2e-76
Identities = 153/157 (97%)
Strand = Plus / Plus
Query: 2342 aggcgctggtggaaaacaacacccttttaaacggctgtcacctccgagtgtctcgtagtg 2401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aggcgctggtggaaaacaacacccttttaaacggctgtcacctccgagtgtctcgtagtg 594
Query: 2402 acagtacgggagctgaacatgaccccaaatgttccgtgttcgtgggcaacataccgttcg 2461
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 acagtacgggagctgaacacgaccccaaatgttccgtgttcgtgggcaacataccgttcg 654
Query: 2462 ccctcgaagacgagggtttgagggagaggttcgagaa 2498
|||||||||||| ||||||||||||||||||||||
Sbjct: 655 ccctcgaagacgnnngtttgagggagaggttcgagaa 691
>BF14_1693_C1
Length = 799
Score = 168 bits (85), Expect = 3e-41
Identities = 118/130 (90%), Gaps = 8/130 (6%)
Strand = Plus / Minus
Query: 12 tacgtaaagtcacaaactatttcactgtttaaatgattaacactgaacttaatcactatt 71
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tacgtagagtcacacactatttcactgtttaaatgattaacactgaacttaatcactatt 71
Query: 72 ta--------taattgaatgaacgtcaaatataacgaaaattaactagtaaagcgtcttt 123
|| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 70 taattatttataattgaatgaacgtcaaatataacgaaaattaactagtaaagcggctat 11
Query: 124 gaaattcatc 133
||||||||||
Sbjct: 10 gaaattcatc 1
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 371,680
Number of extensions: 12570
Number of successful extensions: 12570
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 12568
Number of HSP's successfully gapped: 4
Length of query: 2498
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2481
Effective length of database: 8,119,229
Effective search space: 20143807149
Effective search space used: 20143807149
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)