BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN00936 (UTR included)
(3733 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01049B1F01 90 3e-17
BF01051A1D12 78 1e-13
BF01019A1H08 76 5e-13
BF01025B1E11 72 7e-12
BF01016B1E06 70 3e-11
BF14_335_C4 70 3e-11
>BF01049B1F01
Length = 840
Score = 89.7 bits (45), Expect = 3e-17
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 3539 gttgcagggagaggagcttcaatagtgcctgggactcgcgacccaggggtaggtgta 3595
|||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||
Sbjct: 588 gttgcagggagaggagcttcaacagtgcctgggacttgcgacccaggtgtaggtgta 644
>BF01051A1D12
Length = 812
Score = 77.8 bits (39), Expect = 1e-13
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 395 tatgctacaccacactggcagaatagattgtgcacgtccttgcacggacgaaggc 449
|||||||||| |||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 232 tatgctacacgacactggcagaatagactgtacacgtccttgcacggatgaaggc 286
>BF01019A1H08
Length = 504
Score = 75.8 bits (38), Expect = 5e-13
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 3539 gttgcagggagaggagcttcaatagtgcctgggactcgcgacccaggggtaggt 3592
|||||||||||||||||||||| ||||||||||| | |||||||||| ||||||
Sbjct: 420 gttgcagggagaggagcttcaacagtgcctgggagttgcgacccaggtgtaggt 473
>BF01025B1E11
Length = 786
Score = 71.9 bits (36), Expect = 7e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 399 ctacaccacactggcagaatagattgtgcacgtccttgcacggacgaaggctatagttaa 458
|||||| | |||||||||||| |||||||||||||||||||||| |||||| ||| ||||
Sbjct: 211 ctacacgatactggcagaatatattgtgcacgtccttgcacggatgaaggccatatttaa 270
>BF01016B1E06
Length = 606
Score = 69.9 bits (35), Expect = 3e-11
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 3534 ggtctgttgcagggagaggagcttcaatagtgcctgggactcgcgacccaggggtaggt 3592
|||||||||||| |||||||||||||| |||||| |||| | |||||||||| ||||||
Sbjct: 188 ggtctgttgcagagagaggagcttcaacagtgccggggagtagcgacccaggtgtaggt 246
>BF14_335_C4
Length = 1491
Score = 69.9 bits (35), Expect = 3e-11
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 3546 ggagaggagcttcaatagtgcctgggactcgcgacccaggggtaggt 3592
||||||||||||||| ||||||||||||| |||||||||| ||||||
Sbjct: 1302 ggagaggagcttcaacagtgcctgggacttgcgacccaggtgtaggt 1256
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 357,795
Number of extensions: 6086
Number of successful extensions: 6086
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 6086
Number of HSP's successfully gapped: 6
Length of query: 3733
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3715
Effective length of database: 8,109,745
Effective search space: 30127702675
Effective search space used: 30127702675
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)