BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN01377 (UTR included)
(2650 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01014A1H02 80 2e-14
BF01024A1H07 78 8e-14
BF01035X1C09 76 3e-13
BF14_729_C3 74 1e-12
>BF01014A1H02
Length = 787
Score = 79.8 bits (40), Expect = 2e-14
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 2219 ttcatctcgtctacccgtgatcacggttgctgtaaaggaatcgaaacttcggtattatgt 2278
|||||||||||| ||||||||||||||||||||||||||| ||||| |||| || |||
Sbjct: 250 ttcatctcgtctgcccgtgatcacggttgctgtaaaggaacggaaacgtcggggttgtgt 309
Query: 2279 agttataagataataaaaaa 2298
||| | || |||||||||||
Sbjct: 310 agtaaaaaaataataaaaaa 329
>BF01024A1H07
Length = 726
Score = 77.8 bits (39), Expect = 8e-14
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 2221 catctcgtctacccgtgatcacggttgctgtaaaggaatcgaaacttcggtattatgtag 2280
|||||||||| ||||||||||||||||||| |||| || |||||| || | |||||||||
Sbjct: 645 catctcgtctgcccgtgatcacggttgctgaaaagtaaccgaaacgtcngnattatgtag 704
Query: 2281 ttataagataataaaa 2296
| ||| |||||||||
Sbjct: 705 ntttaaaataataaaa 720
>BF01035X1C09
Length = 778
Score = 75.8 bits (38), Expect = 3e-13
Identities = 71/81 (87%), Gaps = 2/81 (2%)
Strand = Plus / Minus
Query: 2220 tcatctcgtctacccgtgatcacggttgctgtaaaggaatcgaaacttcggtattatgta 2279
||||||||||| ||||||||||||||||||| |||| || |||||| | || || |||||
Sbjct: 667 tcatctcgtcttcccgtgatcacggttgctgcaaagtaaccgaaacgttgggataatgta 608
Query: 2280 gttataagataataaaaaacg 2300
|| |||||||||||||||||
Sbjct: 607 gt--taagataataaaaaacg 589
>BF14_729_C3
Length = 2041
Score = 73.8 bits (37), Expect = 1e-12
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 2224 ctcgtctacccgtgatcacggttgctgtaaaggaatcgaaacttcggtattatgtagtta 2283
||||||| ||||||||||||||||||| |||| || |||||| |||| |||||||||||
Sbjct: 1589 ctcgtctgcccgtgatcacggttgctgcaaagtaaccgaaacgtcgggattatgtagttt 1648
Query: 2284 taagataataaaa 2296
| | |||||||||
Sbjct: 1649 ttaaataataaaa 1661
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 244,354
Number of extensions: 3863
Number of successful extensions: 3863
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3862
Number of HSP's successfully gapped: 4
Length of query: 2650
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2633
Effective length of database: 8,119,229
Effective search space: 21377929957
Effective search space used: 21377929957
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)