BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN01442 (UTR included)
(1330 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01047B2D01 289 6e-78
BF01056B1D02 84 7e-16
BF01023A2A12 82 3e-15
BF01012A2C11 78 4e-14
BF14_729_C3 72 2e-12
BF01037B1H08 70 1e-11
BF01033B1B03 68 4e-11
BF01025A1D01 68 4e-11
BF14_729_C2 68 4e-11
>BF01047B2D01
Length = 870
Score = 289 bits (146), Expect = 6e-78
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 533 agcgttttcactggagtctttggtggagaactgtcataagctgctggagatgttccacta 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agcgttttcactggagtctttggtggagaactgtcataagctgctggagatgttccacta 645
Query: 593 ctcctgggagatgatgccactggtgctggtcatcctgaactacgctggcagcgacctcca 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ctcctgggagatgatgccactggtgctggtcatcctgaactacgctggcagcgacctcca 705
Query: 653 ggaggctgccaggaagatcgacgaag 678
||||||||||||||||||||||||||
Sbjct: 706 ggaggctgccaggaagatcgacgaag 731
>BF01056B1D02
Length = 778
Score = 83.8 bits (42), Expect = 7e-16
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 470 atcatcatcatcatcagccgatgggagcccaatgctgagcaaaggcctcttctcacat 527
|||||||| |||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 746 atcatcattatcatcagcctatcggagcccactgctgagcaaaggcctcttctcacat 689
>BF01023A2A12
Length = 723
Score = 81.8 bits (41), Expect = 3e-15
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 470 atcatcatcatcatcagccgatgggagcccaatgctgagcaaaggcctcttctcacatag 529
||||||||||||||||||| || ||||| || ||||||||||||||||||| |||||| |
Sbjct: 348 atcatcatcatcatcagcctatcggagctcactgctgagcaaaggcctcttatcacatgg 289
Query: 530 agaag 534
|||||
Sbjct: 288 agaag 284
>BF01012A2C11
Length = 780
Score = 77.8 bits (39), Expect = 4e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 220 atgctcccgacgtttcgcttactttgcagcaaccgtgatcacg 262
||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 251 atgctcccgacgtttcggttactttgcagcaaccgtgatcacg 293
>BF14_729_C3
Length = 2041
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 224 tcccgacgtttcgcttactttgcagcaaccgtgatcacgg 263
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1637 tcccgacgtttcggttactttgcagcaaccgtgatcacgg 1598
>BF01037B1H08
Length = 758
Score = 69.9 bits (35), Expect = 1e-11
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 473 atcatcatcatcagccgatgggagcccaatgctgagcaaaggcctcttctcacat 527
||||||| |||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 349 atcatcaccatcagcctatcggagcccacagctgagcaaaggcctcttctcacat 295
>BF01033B1B03
Length = 826
Score = 67.9 bits (34), Expect = 4e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 199 tttataattattattaccaacatgctcccgacgtttcgcttactttgcagcaaccgtgat 258
|||| ||||||| ||| ||| || |||||||| ||||| |||||||||||||||||||||
Sbjct: 153 tttacaattatttttaacaatatactcccgacttttcggttactttgcagcaaccgtgat 212
Query: 259 ca 260
||
Sbjct: 213 ca 214
>BF01025A1D01
Length = 764
Score = 67.9 bits (34), Expect = 4e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 222 gctcccgacgtttcgcttactttgcagcaaccgtgatcacgg 263
||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 433 gctcccgacgtttcggttacttttcagcaaccgtgatcacgg 474
>BF14_729_C2
Length = 1289
Score = 67.9 bits (34), Expect = 4e-11
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 218 acatgctcccgacgtttcgcttactttgcagcaaccgtgatcacgg 263
|||| |||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 583 acatactcccgacgtttcggttacttttcagcaaccgtgatcacgg 538
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 163,304
Number of extensions: 3972
Number of successful extensions: 3972
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 3971
Number of HSP's successfully gapped: 9
Length of query: 1330
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1313
Effective length of database: 8,119,229
Effective search space: 10660547677
Effective search space used: 10660547677
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)