BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN02194 (UTR included)
(1669 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01031A2B05 1191 0.0
BF01039A2F10 119 1e-26
BF01005B1D04 72 3e-12
>BF01031A2B05
Length = 617
Score = 1191 bits (601), Expect = 0.0
Identities = 613/617 (99%)
Strand = Plus / Plus
Query: 416 tttggtcttgcatcacattatattgaaattatcattcaataacctttctttaaatcaccc 475
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tttggtcttgcatcacatcatattgaaattatccttcaataacctttctttaaatcaccc 60
Query: 476 tgaaggagtaagtggagaacaaaaaatgagtcttcagtggaccatcatcgcgtcatttct 535
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgaaggagtaagtggagaacacaaaatgagtcttcagtggaccatcatcgcgtcatttct 120
Query: 536 atacgccgaaatagcatttgtactgttattgaccttaccgatcgcgagtcctgcaagatg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atacgccgaaatagcatttgtactgttattgaccttaccgatcgcgagtcctgcaagatg 180
Query: 596 gaacaagttcttcaaatcgaagtttctagcttacatgacaggccaagcatccatctactt 655
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 181 gaacaagttcttcaaatcgaagtttctagcttacatgaccggccaagcatccatctactt 240
Query: 656 tgttgttctcattggggttctagttctctgccttctcgacgccattcgtgagattcagaa 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgttgttctcattggggttctagttctctgccttctcgacgccattcgtgagattcagaa 300
Query: 716 gtattcaaacgttgaatcttcagaccaccaacatttggatgctgagatgcaaggaaacat 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtattcaaacgttgaatcttcagaccaccaacatttggatgctgagatgcaaggaaacat 360
Query: 776 gcgtctgtttagagctcaaaggaacttgtacatatcaggtattgcacttttccttctagt 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcgtctgtttagagctcaaaggaacttgtacatatcaggtattgcacttttccttctagt 420
Query: 836 cgttattcggcgcttgatccagatgatctgtgagctggcgaccttgtacgcccaatccga 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cgttattcggcgcttgatccagatgatctgtgagctggcgaccttgtacgcccaatccga 480
Query: 896 agcgaacttccgtcaggctcaaagcgcgtctgtagccgctaaagcccttttagaaaagca 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agcgaacttccgtcaggctcaaagcgcgtctgtagccgctaaagcccttttagaaaagca 540
Query: 956 aggtgctggtgatgaggtcaacaagaaggagatggaagatctcaagagccagttatcagc 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aggtgctggtgatgaggtcaacaagaaggagatggaagatctcaagagccagttatcagc 600
Query: 1016 cttggaaaaggagttag 1032
|||||||||||||||||
Sbjct: 601 cttggaaaaggagttag 617
>BF01039A2F10
Length = 799
Score = 119 bits (60), Expect = 1e-26
Identities = 72/77 (93%)
Strand = Plus / Minus
Query: 1 ttattccttttttttagcttccaatttatgtaaaatccttttatttggccaaaaagatga 60
|||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 77 ttattccttttttttagcttccaatttacgtaaaatccttttnnntgggcaaaaagatga 18
Query: 61 cgtcagagccaatacca 77
|||||||||||||||||
Sbjct: 17 cgtcagagccaatacca 1
>BF01005B1D04
Length = 683
Score = 71.9 bits (36), Expect = 3e-12
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 1 ttattccttttttttagcttccaatttatgtaaaatcctt 40
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 40 ttatttcttttttttagcttccaatttatgtaaaatcctt 1
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 225,278
Number of extensions: 4521
Number of successful extensions: 4521
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4521
Number of HSP's successfully gapped: 3
Length of query: 1669
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1652
Effective length of database: 8,119,229
Effective search space: 13412966308
Effective search space used: 13412966308
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)