BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN02654 (UTR included)
(1762 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01047B2H03 258 3e-68
BF01060B1D11 226 9e-59
BF01056B1D01 76 2e-13
>BF01047B2H03
Length = 758
Score = 258 bits (130), Expect = 3e-68
Identities = 206/228 (90%), Gaps = 5/228 (2%)
Strand = Plus / Minus
Query: 226 agtcaaggcttcaattccacaagcagtttatgataggagcgcaaagtaac-agagtaggg 284
||||||| ||||||||||| || ||||||||||||||||| ||||||||| ||||||||
Sbjct: 633 agtcaagacttcaattccataaacagtttatgataggagcacaaagtaacgagagtagga 574
Query: 285 ttagggtcaagtaggaaggtccaagatacggatatattgaagtcttttattcggcaagac 344
||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttaggatcaaggaagaaggcccaagatacggatatattgaagtcttttattcggcaagac 514
Query: 345 gagaatgataaatataagatccatgcaataagtttagaaatgcagaacgagtggttagac 404
||||||||| |||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 513 gagaatgatggatataacatccatgcaatgagtttagatatgcagaacgagtggttagac 454
Query: 405 atag-gagatttttgcatcccattagcactaaaatggcgcaccttaat 451
|||| |||| || ||| ||||||||| |||||||||||||||||||
Sbjct: 453 atagagaga---ttccattccattagcaataaaatggcgcaccttaat 409
>BF01060B1D11
Length = 799
Score = 226 bits (114), Expect = 9e-59
Identities = 196/220 (89%), Gaps = 5/220 (2%)
Strand = Plus / Minus
Query: 234 cttcaattccacaagcagtttatgataggagcgcaaagtaac-agagtagggttagggtc 292
|||||||||||||| ||||||||||||||||| ||||||||| |||||||| ||||| ||
Sbjct: 453 cttcaattccacaaacagtttatgataggagcacaaagtaacgagagtaggattaggatc 394
Query: 293 aagtaggaaggtccaagatacggatatattgaagtcttttattcggcaagacgagaatga 352
||| | ||||| ||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 393 aaggaagaaggctcaagatatggatatattgaagtattttattcagcaagacgagaatga 334
Query: 353 taaatataagatccatgcaataagtttagaaatgcagaacgagtggttagacatag-gag 411
| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||
Sbjct: 333 tggatataagatccatgcaatgcgtttagagatgcagaacgagtggttagacatagagag 274
Query: 412 atttttgcatcccattagcactaaaatggcgcaccttaat 451
| || ||| ||||||||| |||||||||||||||||||
Sbjct: 273 a---ttccattccattagcaataaaatggcgcaccttaat 237
Score = 87.7 bits (44), Expect = 6e-17
Identities = 93/109 (85%), Gaps = 4/109 (3%)
Strand = Plus / Minus
Query: 508 tcccagatcagagtaatttagtaaga----tggggtaaaggtaccgaaaagacttgctat 563
|||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||
Sbjct: 234 tcccagatcagagtaatttagtaagacgggaggggtaaagataccgaaaaaacttgctat 175
Query: 564 atctgtgggaaggcagttggaactgctaggcacttgttagtgggatgta 612
|| || | |||||||||||||| ||||| ||| ||| | |||||||||
Sbjct: 174 atttgcgagaaggcagttggaattgctaagcatttgctgatgggatgta 126
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 177 atcgcaatagttttgggatgagtctaagaaggccatcgg 215
||||||||||||||||||||||||||| |||||||||||
Sbjct: 603 atcgcaatagttttgggatgagtctaaaaaggccatcgg 565
>BF01056B1D01
Length = 838
Score = 75.8 bits (38), Expect = 2e-13
Identities = 111/134 (82%), Gaps = 6/134 (4%)
Strand = Plus / Minus
Query: 406 taggagatttttgcatcccattagcactaaaatggcgcaccttaa-tccatgattggtcg 464
|||||||||||||| ||||| |||||| ||| | || ||| |||| | ||||||||| |
Sbjct: 192 taggagatttttgcgtcccaatagcacaaaagtagcccactttaaatttatgattggttg 133
Query: 465 ccagcattgctaaa-----attctatctcaatgcgttccagatgactctcccagatcaga 519
|||||| ||||||| ||| ||||| |||||||||| |||||||| ||| ||||||
Sbjct: 132 ccagcactgctaaattaaaattttatcttgatgcgttccaaatgactcttccaaatcaga 73
Query: 520 gtaatttagtaaga 533
||||||||||||||
Sbjct: 72 gtaatttagtaaga 59
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 205,898
Number of extensions: 4276
Number of successful extensions: 4276
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4272
Number of HSP's successfully gapped: 5
Length of query: 1762
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1745
Effective length of database: 8,119,229
Effective search space: 14168054605
Effective search space used: 14168054605
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)