BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DPGLEAN03441 (UTR included)
         (1597 letters)

Database: est 
           9484 sequences; 8,280,457 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BF14_729_C3                                                           100   1e-20
BF01047B2H03                                                           78   5e-14

>BF14_729_C3
          Length = 2041

 Score = 99.6 bits (50), Expect = 1e-20
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                        
Query: 1115 atatgtgacggaagttactggcagaataggcaatatcttgaagaaggtttccattaaaac 1174
            |||||||| || |||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 1001 atatgtgaagggagttactgacagaataggcaacatcttgaagaaggtttccattaaaac 1060

                                      
Query: 1175 tatatataaaccttataaaaaagtga 1200
            ||| || |||||  |||| |||||||
Sbjct: 1061 tatttacaaaccacataagaaagtga 1086


>BF01047B2H03
          Length = 758

 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                       
Query: 624 gaggcagttggaactgttaaccatttgctggtgggatgtaatctactcctggatagcggt 683
           ||||||||||||| || | | ||||||||| |||||||||  ||||||||||||||||||
Sbjct: 346 gaggcagttggaattgctgagcatttgctgatgggatgtaggctactcctggatagcggt 287

                  
Query: 684 caatact 690
           |||||||
Sbjct: 286 caatact 280


  Database: est
    Posted date:  Jul 14, 2011  2:25 PM
  Number of letters in database: 8,280,457
  Number of sequences in database:  9484
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 237,106
Number of extensions: 17498
Number of successful extensions: 17498
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 17498
Number of HSP's successfully gapped: 2
Length of query: 1597
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1580
Effective length of database: 8,119,229
Effective search space: 12828381820
Effective search space used: 12828381820
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)