BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN03817 (UTR included)
(1456 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01023A2A12 200 4e-51
BF01037B1H08 186 7e-47
BF01029B2F12 182 1e-45
BF01056B1D02 182 1e-45
BF01052B1H02 143 9e-34
BF01010B2F09 129 1e-29
>BF01023A2A12
Length = 723
Score = 200 bits (101), Expect = 4e-51
Identities = 167/184 (90%), Gaps = 5/184 (2%)
Strand = Plus / Plus
Query: 1235 aagtcgtggtggcctggaggttaaaggaccgcctctcatgcgtgagggcgcgggttcgaa 1294
|||||||||||||||| |||||||||| ||||| ||| |||||||||||||||| |||
Sbjct: 52 aagtcgtggtggcctgaaggttaaagg-ccgcccatca--cgtgagggcgcgggtt-gaa 107
Query: 1295 acctggcaagtaccaatgtgat-ttttcatagtcatacgtactttctaatagtatttaga 1353
|||||||||||||||||||||| ||||| ||||| | ||||||||||| ||||||||||
Sbjct: 108 acctggcaagtaccaatgtgatcttttccgagtcacatgtactttctaacagtatttaga 167
Query: 1354 caccactgacgaacggtgaaggaaaacatcgtgaggaaacctggacttataatttcaaat 1413
||||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||||||
Sbjct: 168 caccactgacggacggtgaaggagaacgtcgtgaggaaacctggtcttataatttcaaat 227
Query: 1414 tata 1417
||||
Sbjct: 228 tata 231
>BF01037B1H08
Length = 758
Score = 186 bits (94), Expect = 7e-47
Identities = 140/154 (90%), Gaps = 1/154 (0%)
Strand = Plus / Plus
Query: 1235 aagtcgtggtggcctggaggttaaaggaccgcctctcatgcgtgagggcgcgggttcgaa 1294
||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 69 aagtcgttgtggcctggaggttaaaggcccgcctctcatacgtgaaggcgcgggttcgaa 128
Query: 1295 acctggcaagtaccaatgtgat-ttttcatagtcatacgtactttctaatagtatttaga 1353
|||||||||||||||||||||| ||||| ||||||| ||||||||||| | |||||||
Sbjct: 129 acctggcaagtaccaatgtgatcttttccgagtcatatgtactttctaagaatatttagt 188
Query: 1354 caccactgacgaacggtgaaggaaaacatcgtga 1387
||||||||||| ||||||| |||||||||||||
Sbjct: 189 caccactgacggacggtgagtgaaaacatcgtga 222
>BF01029B2F12
Length = 749
Score = 182 bits (92), Expect = 1e-45
Identities = 149/169 (88%)
Strand = Plus / Minus
Query: 1237 gtcgtggtggcctggaggttaaaggaccgcctctcatgcgtgagggcgcgggttcgaaac 1296
||||||||||||| |||| |||| | ||| || | || ||||||||||||||||||||
Sbjct: 711 gtcgtggtggcctagaggctaaaagcccgnctnncgtgtatgagggcgcgggttcgaaac 652
Query: 1297 ctggcaagtaccaatgtgatttttcatagtcatacgtactttctaatagtatttagacac 1356
|||||||||||||||||||||| | | || |||| ||||||||||| |||||||||||||
Sbjct: 651 ctggcaagtaccaatgtgatttatgagagacatatgtactttctaagagtatttagacac 592
Query: 1357 cactgacgaacggtgaaggaaaacatcgtgaggaaacctggacttataa 1405
|||||||| |||||||||||| |||||| |||||||||||| |||||||
Sbjct: 591 cactgacggacggtgaaggaagacatcgcgaggaaacctggtcttataa 543
>BF01056B1D02
Length = 778
Score = 182 bits (92), Expect = 1e-45
Identities = 165/184 (89%), Gaps = 9/184 (4%)
Strand = Plus / Plus
Query: 1235 aagtcgtggtggcctggaggttaaaggaccgcctctcatgcgtgagggcgcgggttcgaa 1294
||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||
Sbjct: 457 aagtcgtggtggcctggaggttaaagg-ccgcccatca--cgtgagggcgcgggtt-gaa 512
Query: 1295 acctggcaagtaccaatgtgat-ttttcatagtcatacgtactttctaatagtatttaga 1353
|||||||||||||||||||||| ||||| ||||||| ||||||||||| ||| |||||
Sbjct: 513 acctggcaagtaccaatgtgatcttttccgagtcatatgtactttctaagggtagttaga 572
Query: 1354 caccactgacgaacggtgaaggaaaacatcgtgaggaaacctggacttataatttcaaat 1413
||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 573 caccactgacg----gtgaaggaaaacgtcgtgaggaaacctggtcttataatttcaaat 628
Query: 1414 tata 1417
||||
Sbjct: 629 tata 632
>BF01052B1H02
Length = 790
Score = 143 bits (72), Expect = 9e-34
Identities = 152/178 (85%), Gaps = 3/178 (1%)
Strand = Plus / Minus
Query: 1239 cgtggtggcctggaggttaaaggaccgcctctcatgcgtgagggcgcgggttcgaaacct 1298
||||||||||| ||||||||||| ||||||||| | | |||||| || |||||||| |||
Sbjct: 561 cgtggtggcctagaggttaaaggcccgcctctcgtacatgagggtgcaggttcgaatcct 502
Query: 1299 ggcaagtaccaatgtgatttttcat---agtcatacgtactttctaatagtatttagaca 1355
|| |||||| |||||||| ||| | | | ||| | ||||| ||| ||||||||||||
Sbjct: 501 gggaagtactaatgtgatctttttttcgaatgatatgcactttttaagagtatttagaca 442
Query: 1356 ccactgacgaacggtgaaggaaaacatcgtgaggaaacctggacttataatttcaaat 1413
| ||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 441 ctactgacggacggtgaaggaaaacatcgtgaggaaacctggtcttataatttgaaat 384
>BF01010B2F09
Length = 764
Score = 129 bits (65), Expect = 1e-29
Identities = 120/136 (88%), Gaps = 3/136 (2%)
Strand = Plus / Minus
Query: 1243 gtggcctggaggttaaaggaccgcctctcatgcgtgagggcgcgggttcgaaacctggca 1302
|||| |||||||||||||| | |||||||| ||||| | ||||||||||||||||| ||
Sbjct: 544 gtgggctggaggttaaaggccagcctctcacacgtgaagtcgcgggttcgaaacctgaca 485
Query: 1303 agtaccaatgtgatttttcat--agtcatacgtactttctaatagtatttagacaccact 1360
||||||||||||| | ||||| ||||||| ||||||||||| ||||||||||| |||||
Sbjct: 484 agtaccaatgtga-tcttcatcgagtcatatgtactttctaagagtatttagacgccact 426
Query: 1361 gacgaacggtgaagga 1376
|||| |||||||||||
Sbjct: 425 gacggacggtgaagga 410
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 221,968
Number of extensions: 5320
Number of successful extensions: 5320
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 5311
Number of HSP's successfully gapped: 7
Length of query: 1456
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1439
Effective length of database: 8,119,229
Effective search space: 11683570531
Effective search space used: 11683570531
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)