BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN03959 (UTR included)
(1174 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01029A2D12 674 0.0
>BF01029A2D12
Length = 778
Score = 674 bits (340), Expect = 0.0
Identities = 430/459 (93%), Gaps = 7/459 (1%)
Strand = Plus / Minus
Query: 237 aatgtggctttggttttagccgacaggaaattatatagctagtaggcgagtgt--taacg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 778 aatgtggctttggttttagccgacaggaaattatatagctagtaggcgagtgtgttaata 719
Query: 295 gaaataaaatcgaaacccccatttaagggaggcacaccaggggaagactggtctatcata 354
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 718 agaataaaatcgaaacccccatttaagggaggcacaccaggggaagactggtccatcata 659
Query: 355 tcaaaaacgacataatttgtgaattcgaatgccagaaccggtggagtatg-----aaaaa 409
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 658 tcaaaaacgacataatttgtgaattcgaatgccagaaccggtggagtatgcgacaaaaaa 599
Query: 410 gctgccacagatctcttcatcatctatggaaattttgggcttttaaaaaagttctggcgg 469
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 598 gctgccacagatctcatcatcgtctatggaaattttgggcttttaaaaaagttctgacgg 539
Query: 470 agctacagttagaagacaagcccaaacaaatatggaatttagagaaagcagtgtcagtat 529
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 538 agctaaagttagaagacaagcccaaacaaatatggaatttagagaaaatagtgtcagtat 479
Query: 530 cgacccgtcaaaatccaggatagtaggagaaagaagtgaaagctcatccagagttatcag 589
||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgaccagtaaaaatccaggataataggagaaagaagtgaaagctcatccagagttatcag 419
Query: 590 cacatctggaacggaaaatacgactttggtgctagcagctaatactgcaggtggtcgagc 649
||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct: 418 cacatctggaagggaaaatacgactttggtgctagcagctaatactgcaagtggccgacc 359
Query: 650 gccacctttaatcaatttcaaggctaagatcatccggga 688
|||||| |||||| |||||||||||||| |||||||||
Sbjct: 358 accacctctaatcattttcaaggctaagaacatccggga 320
Score = 480 bits (242), Expect = e-135
Identities = 295/311 (94%), Gaps = 5/311 (1%)
Strand = Plus / Minus
Query: 764 caggtctgggtgacgaacggccgatactagtcatggccattcaacacatgcgtttctcga 823
|||||||||||||| |||||||| |||| ||||||||||||| ||| ||| | ||||||
Sbjct: 318 caggtctgggtgaccaacggccggtactggtcatggccattccacatatg--tctctcga 261
Query: 824 actagttgaaactgctttggccacagatataacaattctttcactgccagcccacacgtg 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 actagttgaaactgctttggccacagatataacaattctttcactgccagcccacacgtg 201
Query: 884 gccaactgcacaaacaaaaattgaacaaaaattggatcaaattgttgcttcttgccagcg 943
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 200 cccaactgcacaaacaaaaattgaacaaaaattggatcaaattg---cttcttgccagcg 144
Query: 944 acagaagctgcctaacgcttggcttgacctctgactagaaactatgaaaactcctgagac 1003
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 acagaagctgcctaaagtttggcttgacctctgactagaaactatgaaaactcctgagac 84
Query: 1004 tgatccaaattactgcacttgcccctgaacagcgggtgaatgcaatataagccaatgaaa 1063
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 83 tgatccacattactgcacttgcccctgaacagcgggtgaatgcaataaaagccaatgaaa 24
Query: 1064 aaaatacccag 1074
|||||||||||
Sbjct: 23 aaaatacccag 13
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 125,233
Number of extensions: 1813
Number of successful extensions: 1813
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1809
Number of HSP's successfully gapped: 2
Length of query: 1174
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1157
Effective length of database: 8,119,229
Effective search space: 9393947953
Effective search space used: 9393947953
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)