BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN04010 (UTR included)
(2946 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01047A2G03 1098 0.0
BF01012A1B09 92 6e-18
BF01012A1E04 82 6e-15
BF01056A1B08 70 2e-11
>BF01047A2G03
Length = 782
Score = 1098 bits (554), Expect = 0.0
Identities = 592/602 (98%), Gaps = 2/602 (0%)
Strand = Plus / Minus
Query: 1 actttttttcataatgaaagagtaaaccacgtgccgggtgaatgtacgcccccacctcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 actttttttcataatgaaagagtaaaccacgtgccgggtgaatgtacgcccccacctcta 709
Query: 61 gattgtgattgagcttttgaatgataaactcattatactcgaaataacatgtaatatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gattgtgattgagcttttgaatgataaactcattatactcgaaataacatgtaatatttg 649
Query: 121 ttatatacagtttaaacaggactggtgtttttagaaaattatcttcctgctggagaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttatatacagtttaaacaggactggtgtttttagaaaattatcttcctgctggagaagaa 589
Query: 181 aaaattaaagtcgaataagtatatatttttttaattcagttggaagaaaaagtaaataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aaaattaaagtcgaataagtatatatttttttaattcagttggaagaaaaagtaaataaa 529
Query: 241 atagaaccctagggtctgttaagaagaaatgcgcacgcatcggaacgaaaaagggcgtaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 atagaaccctagggtctgttaagaagaaatgcgcacgcatcggaacgaaaaagggcgtaa 469
Query: 301 gtgggcgaatgtgcgctagggttggcctagagcctacgatcaatagtgacactgacgtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtgggcgaatgtgcgctagggttggcctagagcctacgatcaatagtgacactgacgtca 409
Query: 361 atgtagtgtcgtccgccattggcccgcacggcattattaaataaacctccggggcgagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atgtagtgtcgtccgccattggcccgcacggcattattaaataaacctccggggcgagag 349
Query: 421 gagtcgcgccgcgggcacagcaccgcatcaggcggcggg-ccgcgcgtgcgagcgccgag 479
||||||||||||||||||||||||||||||||||||||| |||||| || ||| | |
Sbjct: 348 gagtcgcgccgcgggcacagcaccgcatcaggcggcgggcccgcgcacgctcgcggctcg 289
Query: 480 cggcggcccgccatggacgacatgccggacctgtcgcatctcacgcccgaggagcgcgcc 539
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ccgc-gcccgccatggacgacatgccggacctgtcgcatctcacgcccgaggagcgcgcc 230
Query: 540 atcatcgaaggggtcatcatgcgccagcgacaggaggaacagcgggagcacgagattatg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 atcatcgaaggggtcatcatgcgccagcgacaggaggaacagcgggagcacgagattatg 170
Query: 600 ag 601
||
Sbjct: 169 ag 168
>BF01012A1B09
Length = 841
Score = 91.7 bits (46), Expect = 6e-18
Identities = 71/77 (92%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 2873 atgagatctaagactttcgcgagtttttt--atttaaattaaactaatatatttcggata 2930
||||||||||||||| ||||||||||| | |||||||| ||||||||||||||||||||
Sbjct: 705 atgagatctaagactgtcgcgagttttattcatttaaatgaaactaatatatttcggata 764
Query: 2931 -actacgcggattttat 2946
||||||||||||||||
Sbjct: 765 cactacgcggattttat 781
>BF01012A1E04
Length = 841
Score = 81.8 bits (41), Expect = 6e-15
Identities = 70/76 (92%), Gaps = 4/76 (5%)
Strand = Plus / Minus
Query: 2874 tgagatctaagactttcgcgagttt--tttatttaaattaaactaatata-tttcggata 2930
||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||
Sbjct: 618 tgagatctaagactttcgcgagttttattcatttaaatgaaactaatatattttcggata 559
Query: 2931 -actacgcggatttta 2945
|||||||||||||||
Sbjct: 558 tactacgcggatttta 543
>BF01056A1B08
Length = 761
Score = 69.9 bits (35), Expect = 2e-11
Identities = 50/54 (92%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 2873 atgagatctaagactttcgcgagttt--tttatttaaattaaactaatatattt 2924
|||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct: 96 atgagatctaagactttcgcgagttttattcatttaaatgaaactaatatattt 149
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 251,605
Number of extensions: 4543
Number of successful extensions: 4543
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 4538
Number of HSP's successfully gapped: 5
Length of query: 2946
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 2928
Effective length of database: 8,109,745
Effective search space: 23745333360
Effective search space used: 23745333360
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)