BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN04056 (UTR included)
(1792 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01012A2C10 775 0.0
BF14_2412_C1 456 e-128
BF14_729_C3 90 1e-17
BF01044B2E12 74 9e-13
>BF01012A2C10
Length = 773
Score = 775 bits (391), Expect = 0.0
Identities = 412/419 (98%)
Strand = Plus / Plus
Query: 120 atcccggagccagaacaaacaggagatggtccagagaagaaaataactcgcctggcgatc 179
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atcccggagccagaacaaacgggagatggtccagagaagaaaataactcgcctggcgatc 412
Query: 180 ggtgtggagggtggcttcgaccctgactgtggcaaaccaaagtacacttacacagaacac 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ggtgtagagggtggcttcgaccctgactgtggcaaaccaaagtacacttacacagaacac 472
Query: 240 tacagcgttgtggtgctgccggggtttcacacattcccctggcctaatgacgctttacct 299
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tacaacgttgtggtgctgccggggtttcacacattcccctggcctaatgacgctttacct 532
Query: 300 gacgtggtaaagaaatctgttcaggctgtgctagatgcggattctccattcaagctcgct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 533 gacgtggtaaagaaatctgttcaggctgtgctagatgcggattctccattcaaactcgct 592
Query: 360 gaggcggaggctttacacggcacctgggatggggagaagcgagaagtatccgtccactcg 419
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 593 gaggcggaggcgttacacggcacctgggatggagagaagcgagaagtatccgtccactcg 652
Query: 420 gttaacttgaagcagttagataacggcgttaaaataccaccttccggctggaaatgtgcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gttaacttgaagcagttagataacggcgttaaaataccaccttccggctggaaatgtgcc 712
Query: 480 aagtgtgatctgacgaacaacttgtggttgaatctgaccgacgggtccatattgtgtgg 538
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 aagtgtgatctgacaaacaacttgtggttgaatctgaccgacgggtccatattgtgtgg 771
>BF14_2412_C1
Length = 1492
Score = 456 bits (230), Expect = e-128
Identities = 236/238 (99%)
Strand = Plus / Plus
Query: 1013 agatccgtccgaagtggtccgtcccctgataccgtttcaagcgtgtttagacgcgttcat 1072
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 agatccgtctgaagtggtccgtcccctgataccgtttcaagcgtgtttagacgcgttcat 407
Query: 1073 gaaggaggaactcattgaacagttctttagttcagctctcaataagaaagttactgctcg 1132
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gaaggaggaactcattgagcagttctttagttcagctctcaataagaaagttactgctcg 467
Query: 1133 caaaataacccggctggcgactttccccgattacctttggatccagttaaagaaattcac 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caaaataacccggctggcgactttccccgattacctttggatccagttaaagaaattcac 527
Query: 1193 tatcaaagaagattggacacccgccaagctagatgtggccgtggacatgccgtgggag 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tatcaaagaagattggacacccgccaagctagatgtggccgtggacatgccgtgggag 585
>BF14_729_C3
Length = 2041
Score = 89.7 bits (45), Expect = 1e-17
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 1740 aaatgaaactagtattattcggatatcctacgcggattttattatttaaaaac 1792
||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1697 aaatgaagctagtattattcggatatactacgcggattttattatttaaaaac 1645
>BF01044B2E12
Length = 823
Score = 73.8 bits (37), Expect = 9e-13
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 1740 aaatgaaactagtattattcggatatcctacgcggattttattatttaa 1788
|||||||||||||||| ||||||| | ||||||||||||||||||||||
Sbjct: 80 aaatgaaactagtatttttcggatttactacgcggattttattatttaa 32
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 175,731
Number of extensions: 3213
Number of successful extensions: 3213
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3213
Number of HSP's successfully gapped: 4
Length of query: 1792
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1775
Effective length of database: 8,119,229
Effective search space: 14411631475
Effective search space used: 14411631475
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)