BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN04072 (UTR included)
(1387 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_2652_C1 1544 0.0
>BF14_2652_C1
Length = 876
Score = 1544 bits (779), Expect = 0.0
Identities = 786/787 (99%), Gaps = 1/787 (0%)
Strand = Plus / Plus
Query: 509 aggtttggtgtcactggcctttgctgggtctattggaatgacatttgtcatactagcctg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 aggtttggtgtcactggcctttgctgggtctattggaatgacatttgtcatactagcctg 149
Query: 569 tgccttaccacagtataagtattggtggccgttctttgtggttctgttctatgtgctatg 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tgccttaccacagtataagtattggtggccgttctttgtggttctgttctatgtgctatg 209
Query: 629 tcccataccaacaatgattgcaagacgtcacaccgacagcgccggtggtacaaattcacc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tcccataccaacaatgattgcaagacgtcacaccgacagcgccggtggtacaaattcacc 269
Query: 689 atgtatggaaacagctatttttataaccatggggatccttgtcagttcatttgccctgcc 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atgtatggaaacagctatttttataaccatggggatccttgtcagttcatttgccctgcc 329
Query: 749 gatagtgctggctagaactggcgcgatcatgtggggtgcttgttacctgaccttggccgg 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gatagtgctggctagaactggcgcgatcatgtggggtgcttgttacctgaccttggccgg 389
Query: 809 gaatgttattgtttatttgactattttaggtttcttcacaatctttgatatggatgattc 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaatgttattgtttatttgactattttaggtttcttcacaatctttgatatggatgattc 449
Query: 869 ggactatgcgatgtggtgagagatctaaatattgtctgtgacaataatgagaacgatcta 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggactatgcgatgtggtgagagatctaaatattgtctgtgacaataatgagaacgatcta 509
Query: 929 tgtataagtaatgttgtggttatgtccacccgtacgtaattaagtctgatatattgatac 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgtataagtaatgttgtggttatgtccacccgtacgtaattaagtctgatatattgatac 569
Query: 989 tgatattttttattgaaattattgtgttttgattatatgaacggtttatgttttgctttc 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tgatattttttattgaaattattgtgttttgattatatgaacggtttatgttttgctttc 629
Query: 1049 attgttccgagtcggatatgtagactggcatcgtatatgtaatctttaaatagttaaatt 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 attgttccgagtcggatatgtagactggcatcgtatatgtaatctttaaatagttaaatt 689
Query: 1109 atgtcgtctttatttaagtctatactaactcactggctggttttagaatacttaattaag 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 atgtcgtctttatttaagtctatactaactcactggctggttttagaatacttaattaag 749
Query: 1169 tgtaaaagaaatataaaggtatatttgtatttttttacatgtgtagatggttcattctat 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tgtaaaagaaatataaaggtatatttgtatttttttacatgtgtagatggttcattctat 809
Query: 1229 taacata-aataatatattaatttataactacaatactgttttcatcttactatagctaa 1287
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 taacatataataatatattaatttataactacaatactgttttcatcttactatagctaa 869
Query: 1288 gtacata 1294
|||||||
Sbjct: 870 gtacata 876
Score = 184 bits (93), Expect = 3e-46
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 252 tttttaataattctaaaacctaatttattagatgtaagataaagttgaagattttttgaa 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttttaataattctaaaacctaatttattagatgtaagataaagttgaagattttttgaa 60
Query: 312 tttttattaaaaaccatggctggtattaaaggt 344
|||||||||||||||||||||||||||||||||
Sbjct: 61 tttttattaaaaaccatggctggtattaaaggt 93
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 215,184
Number of extensions: 4709
Number of successful extensions: 4709
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4708
Number of HSP's successfully gapped: 2
Length of query: 1387
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1370
Effective length of database: 8,119,229
Effective search space: 11123343730
Effective search space used: 11123343730
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)