BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN04417 (UTR included)
(1186 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01002X1A11 339 6e-93
BF01012A1E04 94 6e-19
BF01056A1B08 92 2e-18
BF01025B2E05 92 2e-18
BF01012A1B09 76 1e-13
BF01052B1F12 72 2e-12
BF01011A1H06 68 3e-11
>BF01002X1A11
Length = 723
Score = 339 bits (171), Expect = 6e-93
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 499 agggatacacaaagtcgatagacatctggtcggtgggctgtatcctggcggaaatgctgt 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agggatacacaaagtcgatagacatctggtcggtgggctgtatcctggcggaaatgctgt 447
Query: 559 ccaatcggccgatattccccgggaagcattacctggaccaactgaaccacattctgggcg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccaatcggccgatattccccgggaagcattacctggaccaactgaaccacattctgggcg 507
Query: 619 tgctaggttctccaagccaggaagacctagactgcattatcaatgaaaagg 669
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgctaggttctccaagccaggaagacctagactgcattatcaatgaaaagg 558
>BF01012A1E04
Length = 841
Score = 93.7 bits (47), Expect = 6e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 atccgaaaatatattagtttcatttaaacgaataatactcgcgaaaatcttagatctca 59
|||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 560 atccgaaaatatattagtttcatttaaatgaataaaactcgcgaaagtcttagatctca 618
>BF01056A1B08
Length = 761
Score = 91.7 bits (46), Expect = 2e-18
Identities = 55/58 (94%)
Strand = Plus / Minus
Query: 3 ccgaaaatatattagtttcatttaaacgaataatactcgcgaaaatcttagatctcat 60
|||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct: 153 ccgaaaatatattagtttcatttaaatgaataaaactcgcgaaagtcttagatctcat 96
>BF01025B2E05
Length = 759
Score = 91.7 bits (46), Expect = 2e-18
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 1 atccgaaaatatattagtttcatttaaacgaataatactcgcgaaaatcttagatctcat 60
||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct: 60 atccgaaaatatactagtttcatttaaatgaataaaactcgcgaaagtcttagatctcat 119
Query: 61 ta 62
||
Sbjct: 120 ta 121
>BF01012A1B09
Length = 841
Score = 75.8 bits (38), Expect = 1e-13
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 7 aaatatattagtttcatttaaacgaataatactcgcgaaaatcttagatctcat 60
|||||||||||||||||||||| |||||| |||||||| | |||||||||||||
Sbjct: 758 aaatatattagtttcatttaaatgaataaaactcgcgacagtcttagatctcat 705
>BF01052B1F12
Length = 785
Score = 71.9 bits (36), Expect = 2e-12
Identities = 55/60 (91%), Gaps = 1/60 (1%)
Strand = Plus / Minus
Query: 1 atccgaaaatatattagtttcatttaaacgaataatactcgcgaaaatcttagatctcat 60
||||||||| |||||||||||||||||| |||||| |||||||||| |||||||| ||||
Sbjct: 355 atccgaaaa-atattagtttcatttaaatgaataaaactcgcgaaattcttagatttcat 297
>BF01011A1H06
Length = 739
Score = 67.9 bits (34), Expect = 3e-11
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 atccgaaaatatattagtttcatttaaacgaataatactcgcgaaaatcttagatctcat 60
||||||||| ||| ||| |||||||||| |||||| | ||||||||||||||||||||||
Sbjct: 548 atccgaaaa-atactagattcatttaaatgaataaaagtcgcgaaaatcttagatctcat 606
Query: 61 ta 62
||
Sbjct: 607 ta 608
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 211,098
Number of extensions: 4698
Number of successful extensions: 4698
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 4698
Number of HSP's successfully gapped: 7
Length of query: 1186
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1169
Effective length of database: 8,119,229
Effective search space: 9491378701
Effective search space used: 9491378701
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)