BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN04613 (UTR included)
(1483 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01060B1D11 165 2e-40
BF01047B2H03 143 9e-34
>BF01060B1D11
Length = 799
Score = 165 bits (83), Expect = 2e-40
Identities = 249/300 (83%), Gaps = 7/300 (2%)
Strand = Plus / Minus
Query: 828 ttgaagttgtggctcgggctcgcggtatcggctgattcgtcagcgttattcagggatcga 887
||||| ||||||||| |||||||| |||| ||||| |||| || ||| | ||||||||
Sbjct: 658 ttgaatttgtggctccggctcgcgacatcgactgatacgtcggctttaattagggatcgc 599
Query: 888 aataattttgggatgactctaaaaaggccatcggagctctataaacacctaagagttttc 947
|||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 598 aatagttttgggatgagtctaaaaaggccatcggagctctataaacacttaagagtttcc 539
Query: 948 aagaaacatacatatcctggggaaatcccaggatgacgttattacatcactcccaaaaaa 1007
||| | |||||||| ||||||| |||| |||| || |||||||||||||| |||||
Sbjct: 538 aag----agacatatcccggggaaagcccataatgatgtcattacatcactccc-aaaaa 484
Query: 1008 aacaaaatgccctagagctagaatc-gagacttcaatttcacaaatagtttatgataggg 1066
| ||| || ||| ||| | || |||||||||||| |||||| |||||||||||||
Sbjct: 483 ccggagatggcccagaactaaagtctgagacttcaattccacaaacagtttatgatagga 424
Query: 1067 gcacaaagtaac-agattagggttaagatcaagtaggaaagccaaagatacggatatatt 1125
|||||||||||| ||| |||| ||| ||||||| | ||| || |||||| |||||||||
Sbjct: 423 gcacaaagtaacgagagtaggattaggatcaaggaagaaggctcaagatatggatatatt 364
>BF01047B2H03
Length = 758
Score = 143 bits (72), Expect = 9e-34
Identities = 201/241 (83%), Gaps = 6/241 (2%)
Strand = Plus / Minus
Query: 899 gatgactctaaaaaggccatcggagctctataaacacctaagagttttcaagaaacatac 958
||||| ||||||||||||||||||||||||||||||| ||||||||| |||| | ||
Sbjct: 758 gatgagtctaaaaaggccatcggagctctataaacacttaagagtttccaag----agac 703
Query: 959 atatcctggggaaatcccaggatgacgttattacatcactcccaaaaaaaacaaaatgcc 1018
|||||| ||||||| |||| |||| || |||||||||||| ||||||| | | |||||
Sbjct: 702 atatcccggggaaagcccataatgatgtcattacatcactctcaaaaaata-gagatgcc 644
Query: 1019 ctagagctagaatcgagacttcaatttcacaaatagtttatgataggggcacaaagtaac 1078
| || ||| | || ||||||||||| || ||| ||||||||||||| ||||||||||||
Sbjct: 643 cctgaactaaagtcaagacttcaattccataaacagtttatgataggagcacaaagtaac 584
Query: 1079 -agattagggttaagatcaagtaggaaagccaaagatacggatatattaaagacatttat 1137
||| |||| ||| ||||||| | ||| ||| |||||||||||||||| ||| | |||||
Sbjct: 583 gagagtaggattaggatcaaggaagaaggcccaagatacggatatattgaagtcttttat 524
Query: 1138 t 1138
|
Sbjct: 523 t 523
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 229,670
Number of extensions: 6851
Number of successful extensions: 6851
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 6848
Number of HSP's successfully gapped: 4
Length of query: 1483
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1466
Effective length of database: 8,119,229
Effective search space: 11902789714
Effective search space used: 11902789714
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)