BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN05011 (UTR included)
(4618 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01030A1H01 934 0.0
BF01052B2H04 206 2e-52
BF01057B1C11 72 9e-12
>BF01030A1H01
Length = 721
Score = 934 bits (471), Expect = 0.0
Identities = 483/487 (99%)
Strand = Plus / Plus
Query: 2532 cagacgtccaagcggcctccgtccgcggccagcctgttccgctcgtcgatggcggcgttg 2591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 cagacgtccaagcggcctccgtccgcggccagcctgttccgctcgtcgatggcggcgttg 294
Query: 2592 gtgagcggcctgtccagcaaggagccgttctacgtccgctgtgtgaagcccaaccccgcg 2651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gtgagcggcctgtccagcaaggagccgttctacgtccgctgtgtgaagcccaaccccgcg 354
Query: 2652 caggcggcccacctttgggacgaacagctggtccgtcaccaggtgtcgtacctgggcctg 2711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 caggcggcccacctttgggacgaacagctggtccgtcaccaggtgtcgtacctgggcctg 414
Query: 2712 gtggagaacgtgcgcgtgcggcgcgcggggttcgcctcccgccagcggtacgaccgcttc 2771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gtggagaacgtgcgcgtgcggcgcgcggggttcgcctcccgccagcggtacgaccgcttc 474
Query: 2772 ctcaagcggtacaagatgctctctcaatacacgtggcccaacttccgaggctccagcaac 2831
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 475 ctgaagcggtacaagatgctatctcaatacacgtggcccaacttccgaggctccagcgac 534
Query: 2832 aaggacgccgtcatggtgctgctcagggacctgcacatcaccgacgtgcagttcggacac 2891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aaggacgccgtcatggtgctgctcagggacctgcacatcaccgacgtgcagttcggacac 594
Query: 2892 accaagctcttcatacggagtgctcgtaccctgcacgagctggagcgcgcccggtccgag 2951
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 accaagctcttcatccggagtgctcgtaccctgcacgagctggagcgcgcccggtccgag 654
Query: 2952 ctgatcccctccatcgtggtgctgctccagaagctgtggagaggaaccctcgccaggcag 3011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ctgatcccctccatcgtggtgctgctccagaagctgtggagaggaaccctcgccaggcag 714
Query: 3012 cgctaca 3018
|||||||
Sbjct: 715 cgctaca 721
>BF01052B2H04
Length = 668
Score = 206 bits (104), Expect = 2e-52
Identities = 147/160 (91%), Gaps = 1/160 (0%)
Strand = Plus / Plus
Query: 3950 ggtggcaaacgagcagacggtctacttggtgggcagtagctaccgtcgcccatggacatc 4009
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
Sbjct: 173 ggtggcaaacgagcagacggcctacttggtgggcagcagctaccgtcgcccatggacacc 232
Query: 4010 cgcaacttctctgttgcggatgccttgccaaccttttttgttaggaatagggaagggtgg 4069
|||| | ||||||||||||||| ||||||| ||| ||| |||||||||||||||||||
Sbjct: 233 cgca-caactctgttgcggatgcgttgccaagcttgttttataggaatagggaagggtgg 291
Query: 4070 gaataagggaatgtcagaaaaaggtggaaatagggaaagg 4109
||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 292 gaataagggaatgtcaggaaaaggtgggaatagggaaagg 331
>BF01057B1C11
Length = 848
Score = 71.9 bits (36), Expect = 9e-12
Identities = 94/112 (83%), Gaps = 1/112 (0%)
Strand = Plus / Minus
Query: 3950 ggtggcaaacgagcagacggtctacttggtgggcagtagctaccgtcgcccatggacatc 4009
|||| ||||| || |||||| ||| |||| ||||||||| || |||||||||||| ||
Sbjct: 315 ggtgacaaacaagaagacggcctagctggttggcagtagccactgtcgcccatggaaatt 256
Query: 4010 cgcaacttctctgttgcggatgccttgccaacctt-ttttgttaggaatagg 4060
||||| ||| |||||||||||| ||||||||||| ||| |||||||||||
Sbjct: 255 tgcaacatctatgttgcggatgcgttgccaaccttggttttttaggaatagg 204
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 340,482
Number of extensions: 5910
Number of successful extensions: 5910
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 5909
Number of HSP's successfully gapped: 3
Length of query: 4618
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 4600
Effective length of database: 8,109,745
Effective search space: 37304827000
Effective search space used: 37304827000
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)