BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN05097 (UTR included)
(1512 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01016B1A11 84 7e-16
BF01055A2F06 78 5e-14
BF01030A2C06 78 5e-14
BF14_911_C2 70 1e-11
BF01055A2B03 68 4e-11
>BF01016B1A11
Length = 786
Score = 83.8 bits (42), Expect = 7e-16
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 1463 tgtctgttcgcgataaacggaaaaactactgcaccgattatcaaaaagtt 1512
||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 566 tgtctgttcgcgataaaaggaaaaactactgcaccgattatcaaacagtt 517
>BF01055A2F06
Length = 787
Score = 77.8 bits (39), Expect = 5e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 1454 ctgtctgtttgtctgttcgcgataaacggaaaaactactgcaccgattatcaaaaagtt 1512
|||||||| |||||| ||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct: 628 ctgtctgtctgtctgatcgagataaacagaaaaactactgcaccgattatcaaacagtt 686
>BF01030A2C06
Length = 599
Score = 77.8 bits (39), Expect = 5e-14
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 1454 ctgtctgtttgtctgttcgcgataaacggaaaaactactgcaccgattatcaaaaagtt 1512
|||||||| ||||||||||||||||||||||||||| ||||||| | ||||||| ||||
Sbjct: 549 ctgtctgtctgtctgttcgcgataaacggaaaaactgctgcaccaaatatcaaacagtt 491
>BF14_911_C2
Length = 1025
Score = 69.9 bits (35), Expect = 1e-11
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 1454 ctgtctgtttgtctgttcgcgataaacggaaaaactactgcaccgattatcaaaaagtt 1512
|||||||| ||| ||||| ||| ||||||||||||||||||| ||||||||||| ||||
Sbjct: 313 ctgtctgtctgtgtgttcccgagaaacggaaaaactactgcagcgattatcaaacagtt 255
>BF01055A2B03
Length = 776
Score = 67.9 bits (34), Expect = 4e-11
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 1467 tgttcgcgataaacggaaaaactactgcaccgattatcaaaaagtt 1512
||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 601 tgttcgcgataaacggaaaaactacagcaccgatcatcaaacagtt 556
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 242,283
Number of extensions: 5853
Number of successful extensions: 5853
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 5853
Number of HSP's successfully gapped: 5
Length of query: 1512
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1495
Effective length of database: 8,119,229
Effective search space: 12138247355
Effective search space used: 12138247355
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)