BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN05138 (UTR included)
(1639 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01040A2F11 1243 0.0
>BF01040A2F11
Length = 666
Score = 1243 bits (627), Expect = 0.0
Identities = 655/666 (98%), Gaps = 10/666 (1%)
Strand = Plus / Plus
Query: 141 ccacacgaaacaacatacgtagtcggaattcttactttacatgcaaaaaacaaggaatgt 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccacacgaaacaacatacgtagtcggaattcttactttacatgcaaaaaacaaggaatgt 60
Query: 201 cactgcaatccgccagttaagttaaaaataagtttttaaatttctattctgggaaaaaac 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cactgcaatccgccagttaagttaaaaataagtttttaaatttctattctgggaaaaaac 120
Query: 261 agtaatgatttctgttgatgtaactttgttcgagttcaaagaacaacaaacgtatcaata 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtaatgatttctgttgatgtaactttgttcgagttcaaagaacaacaaacgtatcaata 180
Query: 321 gtgtgtgttatcataatataataaacctagttcaaagagtcgcgcggctagagg------ 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtgtgtgttatcataatataataaacctagttcaaagagtcgcgcggctagaggcggctg 240
Query: 375 ----cggctggcggcgactagaggcgactggaagcgcacgaggcggcaacctcgccacga 430
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaggcggctggcggcggctagaggcgactggaagcgcacgaggcggcaacctcgccacga 300
Query: 431 ccagcaaccgtcgctcggctgttagttgacgcgcggggcttgtcgcgacgactcgctcgc 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccagcaaccgtcgctcggctgttagttgacgcgcggggcttgtcgcgacgactcgctcgc 360
Query: 491 tacacgcgacatgagcacgcggaaaataagcctcagcgaccggaacctgctggcgctgat 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tacacgcgacatgagcacgcggaaaataagcctcagcgaccggaacctgctggcgctgat 420
Query: 551 attcgaggtcaagaagagaccatgtttgtggaaccacgaggacgaagggtacaacgagag 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attcgaggtcaagaagagaccatgtttgtggaaccacgaggacgaagggtacaacgagag 480
Query: 611 gtcgcggctcacgaccgcctgggcggagatcgccgccaaaataaaactgccagaggactt 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtcgcggctcacgaccgcctgggcggagatcgccgccaaaataaaactgccagaggactt 540
Query: 671 actgagagtcaagtggaagaacctccgggacctgttcaagcgggaagtaaagaaatgtaa 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 actgagagtcaagtggaagaacctccgggacctgttcaagcgggaagtaaagaaatgtaa 600
Query: 731 cgcgcacgcagtggacgagtacaccggcaagtggaggtacttcaagacgctgtggttcct 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cgcgcacgcagtggacgagtacaccggcaagtggaggtacttcaagacgctgtggttcct 660
Query: 791 gaacag 796
||||||
Sbjct: 661 gaacag 666
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 149,525
Number of extensions: 2544
Number of successful extensions: 2544
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2543
Number of HSP's successfully gapped: 2
Length of query: 1639
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1622
Effective length of database: 8,119,229
Effective search space: 13169389438
Effective search space used: 13169389438
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)