BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN05261 (UTR included)
(6424 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01048B1F03 1578 0.0
BF01039A1E06 1300 0.0
BF01014A2B11 543 e-153
>BF01048B1F03
Length = 816
Score = 1578 bits (796), Expect = 0.0
Identities = 811/816 (99%)
Strand = Plus / Plus
Query: 2979 gatcttacttatgtgggaaagtctactttaggagatcttacgaaaagtgccaaagaagct 3038
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatcttacttatgtgggaaaatctactttaggagatcttacgaaaagtgccaaagaagct 60
Query: 3039 gcagctaagaaaggcttgttgaagggtgaaagtcaggatgcttctactagttccaatgca 3098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcagctaagaaaggcttgttgaagggtgaaagtcaggatgcttctactagttccaatgca 120
Query: 3099 aggagggattcgacagcgctgcagacgactaacttacttgctaccacacatcgtgacttc 3158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggagggattcgacagcgctgcagacgactaacttacttgctaccacacatcgtgacttc 180
Query: 3159 ttttccaatattagttctgacttaaacggtcttgctgcttcaactactagtatgttcagt 3218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttccaatattagttctgacttaaacggtcttgctgcttcaactactagtatgttcagt 240
Query: 3219 gacttctttggttccgctaaaggaaagcaatcaaaacctgaaccgtccccgaatactcca 3278
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 241 gacttctttggttccgctaaaggaaagcaatcaaaacctgaaccgtcccctaatactcca 300
Query: 3279 atgacagcaacatttggtcctttctctcaaggtgccaaaggtttagtacagcgctcgcca 3338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgacagcaacatttggtcctttctctcaaggtgccaaaggtttagtacagcgctcgcca 360
Query: 3339 cttattcgccattcttctccagcacccgtcgcaccaccaataaatacgagatctactaat 3398
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 361 cttattcgccactcttctccagcacccgtcgcaccaccaataaacacgagatctactaat 420
Query: 3399 agcgaaaatcaagcgttcctgaatgatcttgtacaacacgttcttgaaggagaaggcgtt 3458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agcgaaaatcaagcgttcctgaatgatcttgtacaacacgttcttgaaggagaaggcgtt 480
Query: 3459 ggatggcttaaactaaatcgtttaaagaagctaatggaagacgaatcatacaggaacatg 3518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggatggcttaaactaaatcgtttaaagaagctaatggaagacgaatcatacaggaacatg 540
Query: 3519 gttcttagtaaacttaatagaaactttaatagaaagacttcaccgaatgataaagtggat 3578
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 541 gttcttagtaaacttaatagaaactttaacagaaagacttcaccgaatgataaagtggat 600
Query: 3579 gacgtgtttataagcaaacccgtatggaaaggcatgctaaaagtacttcaggctgtggtt 3638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gacgtgtttataagcaaacccgtatggaaaggcatgctaaaagtacttcaggctgtggtt 660
Query: 3639 catggcttagaacatacgtattccaatttcgggcttgggggaatggcttccgttttccaa 3698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 catggcttagaacatacgtattccaatttcgggcttgggggaatggcttccgttttccaa 720
Query: 3699 ttagccgaaatggcacacactcactattggagtaaagaattcgcgggattagaacatgga 3758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttagccgaaatggcacacactcactattggagtaaagaattcgcgggattagaacatgga 780
Query: 3759 ggtatggctggttctgcactatctgaacattatgga 3794
||||||||||||||||||||||||||||||||||||
Sbjct: 781 ggtatggctggttctgcactatctgaacattatgga 816
>BF01039A1E06
Length = 736
Score = 1300 bits (656), Expect = 0.0
Identities = 714/736 (97%), Gaps = 9/736 (1%)
Strand = Plus / Plus
Query: 4970 tatacaggtgtgcatggaaggcgtcggactcctgttccaccatagcaag---------tt 5020
||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 tatacaggtgtgcatggaaggcgtcggactcctgttccaccatagcaaggatttcgagtt 60
Query: 5021 cttcgtgcggctcgatcacattcggaagtgcttcacgcagaatgggggtatctttgtttt 5080
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 61 cttcgtgcggctcgatcacattcggaagtgcttcacgcagaacgggggtatctttgtttt 120
Query: 5081 agaagaatttaatcctaaaaccaggcagataattcaaagaaaatataaatctataatggc 5140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agaagaatttaatcctaaaaccaggcagataattcaaagaaaatataaatctataatggc 180
Query: 5141 ggatcaaatatgctatgcggtgttgtgcgtcttctcgtacttcgcggctgggcaggaaca 5200
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 181 ggatcaaatatgctatgcggtgttgtgcgtcttctcttacttcgcggctgggcaggaaca 240
Query: 5201 gaaaaaagctatattggagcaagcggcacagatccatgcacctgaagcaaccacgaaagc 5260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaaaaagctatattggagcaagcggcacagatccatgcacctgaagcaaccacgaaagc 300
Query: 5261 tccgttgtccccaagaaacgacgatgaagtgttccagagcaagcctagcccacagaatac 5320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccgttgtccccaagaaacgacgatgaagtgttccagagcaagcctagcccacagaatac 360
Query: 5321 aagaaaggcatcggaggtccgtgtgagcgaaaccgaaagacagagggtgccaccggacaa 5380
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 361 aagaaaggcatcggaggtccgtgtgagcgaaaccgaaagacagagggtgccgccggacaa 420
Query: 5381 gccgcgtattctacccgagcggccgaagcagctgatcgaaccagaacgagaacctgcgaa 5440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gccgcgtattctacccgagcggccgaagcagctgatcgaaccagaacgagaacctgcgaa 480
Query: 5441 tgatggttcagatagtaaaacaaaagagacaggtagaagggatagtgagggaagctcgga 5500
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 481 tgatagttcagatagtaaaacaaaagagacaggtagaagggatagtgagggaagttcgga 540
Query: 5501 gagagaaagagacagcacacgtccagctgcccaaagaacggacagcttaccaccacgacg 5560
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 541 gagagaaagagacagcacacgtccagcggcccaaagaacggacagcttaccaccacgacg 600
Query: 5561 gccgccaccaccagtgttaccaccgcagagactggtgcgagcttactcgcaggcctcacc 5620
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 601 cccgccaccaccagtgttaccaccgcagnnactggtgcgagcttactcacaggcctcacc 660
Query: 5621 cagacatcacgaaccgccctcgatccctccccgagtcggagtcaccccacgtgccggtcc 5680
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 661 cagacatcatgaaccgccctcgatccctccccgagtcggnntcaccccacgtgccggtcc 720
Query: 5681 gccacccgcactacct 5696
||||||||||||||||
Sbjct: 721 gccacccgcactacct 736
>BF01014A2B11
Length = 303
Score = 543 bits (274), Expect = e-153
Identities = 299/307 (97%), Gaps = 4/307 (1%)
Strand = Plus / Plus
Query: 6113 tttctatatatttttttcttttcccaggctctatagaccattaatattcctaaaaacttt 6172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttctatatatttttttcttttcccaggctctatagaccattaatattcctaaaaacttt 60
Query: 6173 aattgcattttatatagttcctatatcgttaagtgtacatcgctaaacaaatatgctatg 6232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattgcattttatatagttcctatatcgttaagtgtacatcgctaaacaaatatgctatg 120
Query: 6233 ttattattatatattataaattatatcatttaacaaaatgtatattacatgaacgtcttt 6292
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tt----ttatatattataaattatatcatttaacaaaatgtatattacatgaacgtcttt 176
Query: 6293 aaagatattacgcaataaattatgttatctttaagtgttaagccattttatccatgtcac 6352
|||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 177 aaagatatcacgcaataaattatgtcatctataagtgttaagccattttatccatgtcac 236
Query: 6353 catacaaattgtgtaaaactaatcttattgttttcaattattcattcagctcagctcaat 6412
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 237 catacaaattgtgtaaaactaatcttattgtattcaattattcattcagctcagctcaat 296
Query: 6413 atctttc 6419
|||||||
Sbjct: 297 atctttc 303
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 88,368
Number of extensions: 10233
Number of successful extensions: 10233
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 10232
Number of HSP's successfully gapped: 4
Length of query: 6424
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 6406
Effective length of database: 8,109,745
Effective search space: 51951026470
Effective search space used: 51951026470
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)