BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN05290 (UTR included)
(5281 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01013B2F02 1392 0.0
BF01058A1C03 74 3e-12
>BF01013B2F02
Length = 747
Score = 1392 bits (702), Expect = 0.0
Identities = 735/747 (98%)
Strand = Plus / Plus
Query: 3815 gaggaagaatccgaacatacatttcacatcaaccgagccgtcttatacaagaactgagac 3874
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 1 gaggaagaatccgaacatacatttcacatcaacnnngccgtcttataccagaactgagac 60
Query: 3875 tattctactgaacacgaccaacatggacgaagaacaagcgagagcgttgatggaaaaact 3934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tattctactgaacacgaccaacatggacgaagaacaagcgagagcgttgatggaaaaact 120
Query: 3935 gcaaaacgaccccaactttatggcacagaaatctacagaggaattatcacgaatgggaat 3994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcaaaacgaccccaactttatggcacagaaatctacagaggaattatcacgaatgggaat 180
Query: 3995 ccgagtttttcatgacttagacgacaaatcagatatgaacaaagaaacaatggaagtcac 4054
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 181 ccgagtttttcatgacttagacgataaatcagatatgaacaaagaaacaatggaagtcac 240
Query: 4055 aaaaactagatacgccataaatccatcgactataataagcgagacaaaatgcatcggaac 4114
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 241 aaaaactagatacgccataaatccatcgactataataagcgaaacaaaatgcatcggacc 300
Query: 4115 aacacaggaaaaggacaaagagacacaaagagatcacataacagaaatccaagtgcgacc 4174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aacacaggaaaaggacaaagagacacaaagagatcacataacagaaatccaagtgcgacc 360
Query: 4175 aaaaacagaaaaacaagagaacaaaactgaatacaaaataacgaacgcgcaaagaaatcc 4234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaaacagaaaaacaagagaacaaaactgaatacaaaataacgaacgcgcaaagaaatcc 420
Query: 4235 aacgaaggcgtacgaagaaccgctgctgtcctacgaactggacatagaaatgttgaacga 4294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aacgaaggcgtacgaagaaccgctgctgtcctacgaactggacatagaaatgttgaacga 480
Query: 4295 cttcataataaacgagagacatcactcagcgaaacacctcgccgagctcaagaaacgaaa 4354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cttcataataaacgagagacatcactcagcgaaacacctcgccgagctcaagaaacgaaa 540
Query: 4355 cgcacagaacgagtcaaagaaacgacattcagatttcgacctgccaaggaacagccacat 4414
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 541 cgcacagaacgagtcaaagaaacgacattcagatttcgacctaccaaggaacagtcatat 600
Query: 4415 aaaattcagaacagccacatacgaatcccccaaaggaaccatcgtcactagcacagatct 4474
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaaattcagaacagccacatatgaatcccccaaaggaaccatcgtcactagcacagatct 660
Query: 4475 agaaaatagacgtctatcacagctagatcaaatgcaattaagatcgccaagtgaggtgat 4534
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 661 agaaaatagacgtctatcacagctagatcaaatgcaattaagatcgccgagtgaggtgat 720
Query: 4535 acagccccaaaaaccggtgatatcggc 4561
|||||||||||||||||||||||||||
Sbjct: 721 acagccccaaaaaccggtgatatcggc 747
>BF01058A1C03
Length = 779
Score = 73.8 bits (37), Expect = 3e-12
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 378 gcgagtattcatttaaatgaaactaatattttcggat 414
|||||||||||||||||||||||||||||||||||||
Sbjct: 520 gcgagtattcatttaaatgaaactaatattttcggat 484
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 608,519
Number of extensions: 12938
Number of successful extensions: 12938
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 12937
Number of HSP's successfully gapped: 2
Length of query: 5281
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 5263
Effective length of database: 8,109,745
Effective search space: 42681587935
Effective search space used: 42681587935
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)