BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN06278 (UTR included)
(1349 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_729_C3 74 6e-13
BF01049B2H03 70 1e-11
BF01037B1H08 70 1e-11
BF01023A2A12 68 4e-11
>BF14_729_C3
Length = 2041
Score = 73.8 bits (37), Expect = 6e-13
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 262 tacataatcccgacgtgtcgtttactctgcagcagccgtgatcacgggcagac 314
|||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||
Sbjct: 1644 tacataatcccgacgtttcggttactttgcagcaaccgtgatcacgggcagac 1592
>BF01049B2H03
Length = 832
Score = 69.9 bits (35), Expect = 1e-11
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 336 tagtaacccgaaaattattagttccatttaaatgaatactcgcgagagtcttagatatca 395
|||||| ||||||| |||||||| ||||||||||||||||||| | | |||||||| |||
Sbjct: 292 tagtaatccgaaaaatattagtttcatttaaatgaatactcgctaaaatcttagatctca 351
Query: 396 tta 398
|||
Sbjct: 352 tta 354
>BF01037B1H08
Length = 758
Score = 69.9 bits (35), Expect = 1e-11
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 1252 ctaaatacttttagaaagcacatatgacttgaaaaatatcacattggtacttgctaggtc 1311
||||||| | |||||||| |||||||||| | |||| ||||||||||||||||| ||||
Sbjct: 187 ctaaatattcttagaaagtacatatgactcggaaaagatcacattggtacttgccaggtt 128
Query: 1312 tcgaacc 1318
|||||||
Sbjct: 127 tcgaacc 121
>BF01023A2A12
Length = 723
Score = 67.9 bits (34), Expect = 4e-11
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 1249 tgtctaaatacttttagaaagcacatatgacttgaaaaatatcacattggtacttgctag 1308
|||||||||||| |||||||| |||| ||||| | |||| ||||||||||||||||| ||
Sbjct: 169 tgtctaaatactgttagaaagtacatgtgactcggaaaagatcacattggtacttgccag 110
Query: 1309 gt 1310
||
Sbjct: 109 gt 108
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 162,395
Number of extensions: 7698
Number of successful extensions: 7698
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 7698
Number of HSP's successfully gapped: 4
Length of query: 1349
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1332
Effective length of database: 8,119,229
Effective search space: 10814813028
Effective search space used: 10814813028
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)