BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN07227 (UTR included)
(1133 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_729_C3 98 4e-20
BF01012A1B09 88 4e-17
BF01044B2E12 84 6e-16
BF01019B1G10 80 9e-15
>BF14_729_C3
Length = 2041
Score = 97.6 bits (49), Expect = 4e-20
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 1085 tactacgcggattttattatttaaaaactacataatcccgacgtttcgg 1133
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1672 tactacgcggattttattatttaaaaactacataatcccgacgtttcgg 1624
>BF01012A1B09
Length = 841
Score = 87.7 bits (44), Expect = 4e-17
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 1086 actacgcggattttattatttaaaaactacataatcccgacgtttcgg 1133
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 766 actacgcggattttattattttaaaactacataatcccgacgtttcgg 813
>BF01044B2E12
Length = 823
Score = 83.8 bits (42), Expect = 6e-16
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 1083 tttactacgcggattttattatttaaaaactacataatcccgacgtttcgg 1133
|||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 57 tttactacgcggattttattatttaannnctacataatcccgacgtttcgg 7
>BF01019B1G10
Length = 488
Score = 79.8 bits (40), Expect = 9e-15
Identities = 50/52 (96%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 1083 tttactacgcggattttattattt-aaaaactacataatcccgacgtttcgg 1133
||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 316 tttactacgcgaattttattattttaaaaactacataatcccgacgtttcgg 367
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 136,983
Number of extensions: 3367
Number of successful extensions: 3367
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3366
Number of HSP's successfully gapped: 4
Length of query: 1133
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1116
Effective length of database: 8,119,229
Effective search space: 9061059564
Effective search space used: 9061059564
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)