BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN07294 (UTR included)
(1204 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01024A2B03 92 2e-18
BF01044A1D01 84 6e-16
BF14_3046_C1 72 2e-12
>BF01024A2B03
Length = 724
Score = 91.7 bits (46), Expect = 2e-18
Identities = 89/102 (87%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 1062 ttttttttttatgctatggcttcattctcactggaatcgttcaatattctgccaatgtcg 1121
||||||||| ||||||| ||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 336 tttttttttaatgctatcgcttcgctctcactggaatcgttgaatattttgccaatgtc- 278
Query: 1122 accttttttatctgttggacgaattataatatcgagtactgt 1163
| | ||||||| ||| |||||||||||||| ||||||||||
Sbjct: 277 aacgtttttatttgtaggacgaattataatcccgagtactgt 236
>BF01044A1D01
Length = 742
Score = 83.8 bits (42), Expect = 6e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1064 ttttttttatgctatggcttcattctcactggaatcgttcaatattctgccaatgtcgac 1123
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct: 178 ttttttttatgctatggcttcatttgcactggaatcgtggaatattctgccaatgtcaac 237
Query: 1124 cttttt 1129
|||||
Sbjct: 238 gttttt 243
>BF14_3046_C1
Length = 1016
Score = 71.9 bits (36), Expect = 2e-12
Identities = 80/92 (86%), Gaps = 2/92 (2%)
Strand = Plus / Minus
Query: 1072 atgctatggcttcattctcactggaatcgttcaatattctgccaatgtcgacctttttta 1131
||||||||||||| ||| |||||||||||| |||||| |||||||||| || ||||| |
Sbjct: 1016 atgctatggcttc-ttcgcactggaatcgtggaatattttgccaatgtcaacgttttt-a 959
Query: 1132 tctgttggacgaattataatatcgagtactgt 1163
| ||||||| ||||||||| |||||||||||
Sbjct: 958 tttgttggaggaattataaactcgagtactgt 927
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 284,358
Number of extensions: 9300
Number of successful extensions: 9300
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 9297
Number of HSP's successfully gapped: 3
Length of query: 1204
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1187
Effective length of database: 8,119,229
Effective search space: 9637524823
Effective search space used: 9637524823
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)