BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN07561 (UTR included)
(1786 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_335_C2 168 2e-41
BF01043B1E03 119 2e-26
BF01055B2A04 74 8e-13
BF01031B2E06 74 8e-13
>BF14_335_C2
Length = 1827
Score = 168 bits (85), Expect = 2e-41
Identities = 138/155 (89%), Gaps = 3/155 (1%)
Strand = Plus / Minus
Query: 692 gagaggtataacggctaaatctctctacaacctactaaaagacttgggcctgtccagaac 751
|||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 1107 gagaggtataacagctaaatctctctacagcctactaaaatacttgggcctgtccagaac 1048
Query: 752 tcccatcaattcgttcttggaacgtacttcgaaggcagccctagtaggttcttttcaaat 811
| || || ||| ||||| ||||||||||||||| |||| ||||||||||| ||||||||
Sbjct: 1047 taacaccagttcattcttcgaacgtacttcgaagacagctctagtaggttcgtttcaaat 988
Query: 812 atggttaggaagggagaggagcttggacagtggag 846
||||||||| ||||||||||||||| ||||||
Sbjct: 987 ttggttagga---gagaggagcttggacggtggag 956
>BF01043B1E03
Length = 830
Score = 119 bits (60), Expect = 2e-26
Identities = 137/162 (84%), Gaps = 3/162 (1%)
Strand = Plus / Plus
Query: 685 tgggagcgagaggtataacggctaaatctctctacaacctactaaaagacttgggcctgt 744
|||||| | |||||||||| ||| |||||||||||||||||| ||| ||||| |||||
Sbjct: 204 tgggagtgcgaggtataacagcttcatctctctacaacctactgaaacacttgagcctgc 263
Query: 745 ccagaactcccatcaattcgttcttggaacgtacttcgaaggcagccctagtaggttctt 804
|||||||| |||||| || ||||||||||||||| | ||||||| || |||||| |
Sbjct: 264 ccagaactaacatcaaatcattcttggaacgtactgcaaaggcaggcc---taggtttgt 320
Query: 805 ttcaaatatggttaggaagggagaggagcttggacagtggag 846
||||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 321 ttcaaatttggttaggtagagagaggaccttggacagtggag 362
>BF01055B2A04
Length = 830
Score = 73.8 bits (37), Expect = 8e-13
Identities = 52/56 (92%), Gaps = 2/56 (3%)
Strand = Plus / Minus
Query: 689 agcgagaggtataacggctaaatctctctacaacctactaaaagacttgggcctgt 744
||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 420 agcgaaaggtataacagctaaatctct--acaacctactaaaagacttgggcctgt 367
>BF01031B2E06
Length = 707
Score = 73.8 bits (37), Expect = 8e-13
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 682 aagtgggagcgagaggtataacggctaaatctctctacaacctactaaaagacttgggcc 741
||||||||||||| | | ||| |||||||||||| |||||||||||||| ||||||||
Sbjct: 528 aagtgggagcgagcgttgtaaaagctaaatctctccacaacctactaaaaaccttgggcc 587
Query: 742 tgtccagaactcccatcaattcgttcttggaacgtacttcgaaggcagc 790
|||||||| || |||||| | | || |||| |||||||||||||||
Sbjct: 588 tgtccagatctaacatcaaataatctttagaacatacttcgaaggcagc 636
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 216,657
Number of extensions: 4256
Number of successful extensions: 4256
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 4252
Number of HSP's successfully gapped: 4
Length of query: 1786
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1769
Effective length of database: 8,119,229
Effective search space: 14362916101
Effective search space used: 14362916101
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)