BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN08031 (UTR included)
(3184 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01061B2F05 1528 0.0
>BF01061B2F05
Length = 788
Score = 1528 bits (771), Expect = 0.0
Identities = 783/788 (99%)
Strand = Plus / Plus
Query: 259 cacgcaccgtcgcgaacacacgttattacggctgcaacacgccggccgcacgcgcgcaat 318
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacgcaccgtctcgaacacacgttattacggctgcaacacgccggccgcacgcgcgcaat 60
Query: 319 tcgaacgtagtgcaccaaacaacgcgaccggttcccttaaccgatgagcgtgacacctct 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcgaacgtagtgcaccaaacaacgcgaccggttcccttaaccgatgagcgtgacacctct 120
Query: 379 aagtgttgtgtgacttatagtgaaactcagtgcagacatgtgcgagtgatggattacagc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagtgttgtgtgacttatagtgaaactcagtgcagacatgtgcgagtgatggattacagc 180
Query: 439 accgtcgattgctgacggggttctgatcccgtgtatgcccaggcgccggtggccgcgcca 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accgtcgattgctgacggggttctgatcccgtgtatgcccaggcgccggtggccgcgcca 240
Query: 499 gtatgcgcgcccctacggtgctgatcgccctgctagggtttctgccccaggtgctgtcgt 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtatgcgcgcccctacggtgctgatcgccctgctagggtttctgccccaggtgctgtcgt 300
Query: 559 ccggttcgttcgaactgaggataaaaagttttacaaactcgctcggtaggctaagtagtg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggttcgttcgaactgaggataaaaagttttacaaactcgctcggtaggctaagtagtg 360
Query: 619 ggcagtgctgtgatggttccaatagtgagcagtgcgtagcgccttgcaggactaaattta 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggcagtgctgtgatggttccaatagtgagcagtgcgtagcgccttgcaggactaaattta 420
Query: 679 gagtgtgcctcaagatataccaagccaatatcgataccacatcaccgtgtaccttcggtg 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gagtgtgcctcaagatataccaagccaatatcgataccacatcaccgtgtaccttcggtg 480
Query: 739 acatcactacaccggtgctcggtggaaattctttggatgtaccgaacctcaatgtcgaag 798
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 481 acatcactacaccggtgctcggtggaaattctttggatgtgccgaacctcaatgtcgaag 540
Query: 799 gattcaccaaccccatcgttttcccctttgatttcacgtggccgggtacattctctctca 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gattcaccaaccccatcgttttcccctttgatttcacgtggccgggtacattctctctca 600
Query: 859 ttgtcgaagcgtggcacgacactaacgatacgtcaagatcggacgacacattgatcgcgc 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgtcgaagcgtggcacgacactaacgatacgtcaagatcggacgacacattgatcgcgc 660
Query: 919 ggatgacgaagcagagtatagctgacgtcggaggtccgtggaacgacgaggaacaacgct 978
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 661 ggatgacgaagcagagtatagctgacgtcggnnntccgtggaacgacgaggaacaacgct 720
Query: 979 ggggaggaatgagtggggtccacctgaagctctcgtatagagtgacgtgttctccgcatt 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggggaggaatgagtggggtccacctgaagctctcgtatagagtgacgtgttctccgcatt 780
Query: 1039 actacgga 1046
||||||||
Sbjct: 781 actacgga 788
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 206,876
Number of extensions: 3278
Number of successful extensions: 3278
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3278
Number of HSP's successfully gapped: 1
Length of query: 3184
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3166
Effective length of database: 8,109,745
Effective search space: 25675452670
Effective search space used: 25675452670
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)