BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN08619 (UTR included)
(2062 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_3046_C1 96 3e-19
BF01044A1D01 86 3e-16
BF01049B2B11 86 3e-16
BF01024A2B03 82 4e-15
>BF14_3046_C1
Length = 1016
Score = 95.6 bits (48), Expect = 3e-19
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 187 ttataattcgtccaacaaataaaaacgttgacattggcagaatattacacgattccggtg 246
||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||| |||
Sbjct: 940 ttataattcctccaacaaataaaaacgttgacattggcaaaatattccacgattccagtg 999
Query: 247 cgaa 250
||||
Sbjct: 1000 cgaa 1003
>BF01044A1D01
Length = 742
Score = 85.7 bits (43), Expect = 3e-16
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 204 aataaaaacgttgacattggcagaatattacacgattccggtgcgaatgaagcca 258
||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct: 246 aataaaaacgttgacattggcagaatattccacgattccagtgcaaatgaagcca 192
>BF01049B2B11
Length = 780
Score = 85.7 bits (43), Expect = 3e-16
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 186 attataattcgtccaacaaataaaaacgttgacattggcagaatattacacgattccggt 245
|||||||||| |||||||||||||||||| |||||| ||| |||||| ||||||||| |
Sbjct: 14 attataattcatccaacaaataaaaacgtcgacattagcaaaatattccacgattccaga 73
Query: 246 gcgaatgaagc 256
|||||||||||
Sbjct: 74 gcgaatgaagc 84
>BF01024A2B03
Length = 724
Score = 81.8 bits (41), Expect = 4e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 186 attataattcgtccaacaaataaaaacgttgacattggcagaatattacacgattcc 242
|||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 248 attataattcgtcctacaaataaaaacgttgacattggcaaaatattcaacgattcc 304
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 323,624
Number of extensions: 7119
Number of successful extensions: 7119
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 7119
Number of HSP's successfully gapped: 4
Length of query: 2062
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2045
Effective length of database: 8,119,229
Effective search space: 16603823305
Effective search space used: 16603823305
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)