BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN09044 (UTR included)
(4000 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01056A2E10 763 0.0
>BF01056A2E10
Length = 817
Score = 763 bits (385), Expect = 0.0
Identities = 398/401 (99%), Gaps = 1/401 (0%)
Strand = Plus / Plus
Query: 2865 gcggcctgctccctcgaccaccgcgacgcgaacggcactgtcatgaagttccttctggag 2924
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gcggcctgctccctcgaccaccgcgacgcgaacggcaccgtcatgaagttccttctggag 60
Query: 2925 gtggtgcgcacggccaacgcggccagaaacaagggcgaagcggagaggagccccgtgcaa 2984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtggtgcgcacggccaacgcggccagaaacaagggcgaagcggagaggagccccgtgcaa 120
Query: 2985 gcggcggcggtgagcgcggtgagtgctctgggcgagtcgttgacgtacgcgctgttggag 3044
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcggcggcggtgagcgcggt-agtgctctgggcgagtcgttgacgtacgcgctgttggag 179
Query: 3045 gcttcggcgctccacctgcacgcctacatgcttggggacgtggcggaggtgctgctgcag 3104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gcttcggcgctccacctgcacgcctacatgcttggggacgtggcggaggtgctgctgcag 239
Query: 3105 ctgctgtcgtggcagcgcgcccccaccggggccgcggagagcgactggctccgatctagt 3164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctgctgtcgtggcagcgcgcccccaccggggccgcggagagcgactggctccgatctagt 299
Query: 3165 ttgctgcgtttgccgcgccgacctcccgcgcccacggacattcagtgtgcgcaattccat 3224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 300 ttgctgcgtttgccgcgccgacctcccgcgcccacggacattcagtgtgcgcaatttcat 359
Query: 3225 cagtacgcgctcagggccgagaagtgcaaggagatgactcg 3265
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cagtacgcgctcagggccgagaagtgcaaggagatgactcg 400
Score = 220 bits (111), Expect = 1e-56
Identities = 117/119 (98%)
Strand = Plus / Plus
Query: 3391 acgagaactcgtctcttcaaatgaacgtcacccctcagagatcgctcggaagcaagaaac 3450
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 699 acgagaactcgtctcttcaaatgaacgtcacccctcagagatcgctcggaagcaataaac 758
Query: 3451 gaattagcgagtctcgctggagtgacggcgcggctcctgctacagcttgataccggatg 3509
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 759 gaattagcgagtctcgctggagtgacggcgcggctcctgctacagcttgatactggatg 817
Score = 204 bits (103), Expect = 8e-52
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 3265 gaacgtcggaactcttgtactcgtcggagtacttcgtttttcatgtgctttgtcacatac 3324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaacgtcggaactcttgtactcgtcggagtacttcgtttttcatgtgctttgtcacatac 619
Query: 3325 tgttcaccgagtctctggatgtctatgtttatctgaaggcgct 3367
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgttcaccgagtctctggatgtctatgtttatctgaaggcgct 662
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 409,278
Number of extensions: 9331
Number of successful extensions: 9331
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 9330
Number of HSP's successfully gapped: 3
Length of query: 4000
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3982
Effective length of database: 8,109,745
Effective search space: 32293004590
Effective search space used: 32293004590
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)