BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN09071 (UTR included)
(1879 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01030A2C06 101 4e-21
BF01016B1A11 94 1e-18
BF01055A2F06 88 6e-17
BF01055A2B03 84 9e-16
BF14_911_C2 76 2e-13
>BF01030A2C06
Length = 599
Score = 101 bits (51), Expect = 4e-21
Identities = 85/96 (88%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 1 gtttgataatcggtgcagtagtttttccgtttatcgcga----acaaacagacagacgcg 56
|||||||| | ||||||| |||||||||||||||||||| ||| ||||||||||||
Sbjct: 495 gtttgatatttggtgcagcagtttttccgtttatcgcgaacagacagacagacagacgcc 554
Query: 57 gcgagggactttgttttataacatgtattgattgat 92
||||||||||||||||||||| | ||||||||||||
Sbjct: 555 gcgagggactttgttttataatacgtattgattgat 590
>BF01016B1A11
Length = 786
Score = 93.7 bits (47), Expect = 1e-18
Identities = 78/88 (88%), Gaps = 4/88 (4%)
Strand = Plus / Plus
Query: 1 gtttgataatcggtgcagtagtttttccgtttatcgcgaacaaacagacagacgcggcga 60
|||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||
Sbjct: 521 gtttgataatcggtgcagtagtttttccttttatcgcgaaca----gacagtcgtagcga 576
Query: 61 gggactttgttttataacatgtattgat 88
||||||||||| ||||| ||||||||||
Sbjct: 577 gggactttgttctataatatgtattgat 604
>BF01055A2F06
Length = 787
Score = 87.7 bits (44), Expect = 6e-17
Identities = 72/81 (88%), Gaps = 4/81 (4%)
Strand = Plus / Minus
Query: 1 gtttgataatcggtgcagtagtttttccgtttatcgcga----acaaacagacagacgcg 56
||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||| ||
Sbjct: 682 gtttgataatcggtgcagtagtttttctgtttatctcgatcagacagacagacagaagca 623
Query: 57 gcgagggactttgttttataa 77
|||||||||||||||||||||
Sbjct: 622 gcgagggactttgttttataa 602
>BF01055A2B03
Length = 776
Score = 83.8 bits (42), Expect = 9e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 1 gtttgataatcggtgcagtagtttttccgtttatcgcgaacaaacagacagacg 54
||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 560 gtttgatgatcggtgctgtagtttttccgtttatcgcgaacaaacagacggacg 613
>BF14_911_C2
Length = 1025
Score = 75.8 bits (38), Expect = 2e-13
Identities = 63/71 (88%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 1 gtttgataatcggtgcagtagtttttccgtttatcgcga----acaaacagacagacgcg 56
|||||||||||| ||||||||||||||||||| ||| || ||| |||||||||||||
Sbjct: 259 gtttgataatcgctgcagtagtttttccgtttctcgggaacacacagacagacagacgcg 318
Query: 57 gcgagggactt 67
|||||||||||
Sbjct: 319 gcgagggactt 329
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 340,972
Number of extensions: 27878
Number of successful extensions: 27878
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 27875
Number of HSP's successfully gapped: 5
Length of query: 1879
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1862
Effective length of database: 8,119,229
Effective search space: 15118004398
Effective search space used: 15118004398
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)