BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN09108 (UTR included)
(1064 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01047B2H03 137 4e-32
BF01060B1D11 125 2e-28
BF01056B1D01 82 2e-15
>BF01047B2H03
Length = 758
Score = 137 bits (69), Expect = 4e-32
Identities = 179/213 (84%), Gaps = 2/213 (0%)
Strand = Plus / Minus
Query: 649 aaaaagaaataaccacaaaccaacgatcaataggttttgtgagagaaggcactagggcta 708
|||||||||||||||||||| |||| ||| |||||||||||||||| || ||||||||
Sbjct: 212 aaaaagaaataaccacaaacgggcgattaattggttttgtgagagaagacattagggcta 153
Query: 709 caaaatcaaaagtcaagccttactctattattaaagcggcttcagattggactataatga 768
||| ||||| |||||||||||||||| ||||||||| ||| ||||| |||||||| |
Sbjct: 152 taaagtcaaacatcaagccttactctatccttaaagcggtttcggattgcactataatca 93
Query: 769 tggatacatatgagaagcaatataaaatcccagaggatatttgtgaatcggccttcaaac 828
||||||| |||| | | | ||| |||||||| ||| ||| ||||| |||| | || ||
Sbjct: 92 tggatacgtatggggaacgatacaaaatccccgagcata-ttgtgtgtcggtttccagac 34
Query: 829 cggacatatttt-tatattcgcgaattttaaag 860
| |||||||||| ||||||||||||||||||||
Sbjct: 33 cagacatattttatatattcgcgaattttaaag 1
Score = 105 bits (53), Expect = 1e-22
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 117 gatgaatctaaaaaggccatcggagctctataaacacctaagagtttccaagagacatta 176
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 758 gatgagtctaaaaaggccatcggagctctataaacacttaagagtttccaagagacatat 699
Query: 177 tctggggaaatcccaggatgacgttattacatcactc 213
| ||||||| |||| |||| || ||||||||||||
Sbjct: 698 cccggggaaagcccataatgatgtcattacatcactc 662
Score = 75.8 bits (38), Expect = 1e-13
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 554 aacttgctacatctgcaggaaggcatttggaactgctaagcatttgctggtgggatgtag 613
||||||||| |||||| | ||||| |||||| |||| ||||||||||| ||||||||||
Sbjct: 365 aacttgctatatctgcgaggaggcagttggaattgctgagcatttgctgatgggatgtag 306
Query: 614 ggtattcctagatagcggtcagtact 639
| || |||| ||||||||||| ||||
Sbjct: 305 gctactcctggatagcggtcaatact 280
>BF01060B1D11
Length = 799
Score = 125 bits (63), Expect = 2e-28
Identities = 99/111 (89%)
Strand = Plus / Minus
Query: 106 aataattttgggatgaatctaaaaaggccatcggagctctataaacacctaagagtttcc 165
|||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 598 aatagttttgggatgagtctaaaaaggccatcggagctctataaacacttaagagtttcc 539
Query: 166 aagagacattatctggggaaatcccaggatgacgttattacatcactccca 216
||||||||| | ||||||| |||| |||| || |||||||||||||||
Sbjct: 538 aagagacatatcccggggaaagcccataatgatgtcattacatcactccca 488
Score = 99.6 bits (50), Expect = 9e-21
Identities = 96/111 (86%), Gaps = 4/111 (3%)
Strand = Plus / Minus
Query: 508 tcccggatcagagtaatttagtaaga----tggggcaaagatacccaaaaaacttgctac 563
|||| ||||||||||||||||||||| |||| ||||||||| |||||||||||||
Sbjct: 234 tcccagatcagagtaatttagtaagacgggaggggtaaagataccgaaaaaacttgctat 175
Query: 564 atctgcaggaaggcatttggaactgctaagcatttgctggtgggatgtagg 614
|| ||| ||||||| |||||| |||||||||||||||| |||||||||||
Sbjct: 174 atttgcgagaaggcagttggaattgctaagcatttgctgatgggatgtagg 124
>BF01056B1D01
Length = 838
Score = 81.8 bits (41), Expect = 2e-15
Identities = 112/133 (84%), Gaps = 7/133 (5%)
Strand = Plus / Minus
Query: 408 aggagatttttgcatcccattagcattaaa-tggcgcactttaa-ttcatgattggtcgc 465
||||||||||||| ||||| ||||| ||| | || |||||||| || ||||||||| ||
Sbjct: 191 aggagatttttgcgtcccaatagcacaaaagtagcccactttaaatttatgattggttgc 132
Query: 466 cagcactgctaaatt-----tttatctcaatgcgttccagatgactctcccggatcagag 520
||||||||||||||| ||||||| |||||||||| |||||||| || |||||||
Sbjct: 131 cagcactgctaaattaaaattttatcttgatgcgttccaaatgactcttccaaatcagag 72
Query: 521 taatttagtaaga 533
|||||||||||||
Sbjct: 71 taatttagtaaga 59
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 93,255
Number of extensions: 1389
Number of successful extensions: 1389
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1384
Number of HSP's successfully gapped: 7
Length of query: 1064
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1047
Effective length of database: 8,119,229
Effective search space: 8500832763
Effective search space used: 8500832763
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)