BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN09254 (UTR included)
(3391 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01019A1D01 1084 0.0
>BF01019A1D01
Length = 705
Score = 1084 bits (547), Expect = 0.0
Identities = 572/577 (99%), Gaps = 5/577 (0%)
Strand = Plus / Minus
Query: 2817 gtaaatgtattgaaatttttgctcggcttatggttgaggcatttggatcataaacaacat 2876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gtaaatgtattgaaatttttgctcggcttatggttgaggcatttggatcataaacaacat 646
Query: 2877 aacctgtgtgggtagaagtgggtgtgctagttatagattttttttttt--attatataga 2934
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 645 aacctgtgtgggtagaagtgggtgtgctagttatagatttttttttttttattatataga 586
Query: 2935 aaataaatttctaggttgcagtaacaaacttaatcgtggtgttatgtaatagttatatga 2994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aaataaatttctaggttgcagtaacaaacttaatcgtggtgttatgtaatagttatatga 526
Query: 2995 tgtactagatatagtcgttacaattttaacaaatataccactgacacatttaaatagcac 3054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgtactagatatagtcgttacaattttaacaaatataccactgacacatttaaatagcac 466
Query: 3055 aatatgaaacttggactctgtaatcattgaaattgccttgtctgtttttttttttgtttt 3114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aatatgaaacttggactctgtaatcattgaaattgccttgtctgtttttttttttgtttt 406
Query: 3115 tttttttttaaatatttatctcttaagtgaattatcgaaattatttattccaattttaaa 3174
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tttt-ttttaaatatttatctcttaagtgaattatcgaaattatttattccaattttaaa 347
Query: 3175 aatgtgacagatgttaataatttaatacgaaaaaaaaaaagtataattgttgtttggtga 3234
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 346 aatgtgacagatgttaataatttaatacg--aaaaaaaaagtataattgttgtttggtga 289
Query: 3235 ttatgttattttatttataatttatattaatttatttaacgaatgctctgtaaccaattg 3294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttatgttattttatttataatttatattaatttatttaacgaatgctctgtaaccaattg 229
Query: 3295 tgaccaatatatgtatagggctgtgtatgtgagtcatacgttaagtgttgcggtgtttaa 3354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tgaccaatatatgtatagggctgtgtatgtgagtcatacgttaagtgttgcggtgtttaa 169
Query: 3355 gattacattgtaagagtaaataagtttcgttttgctt 3391
|||||||||||||||||||||||||||||||||||||
Sbjct: 168 gattacattgtaagagtaaataagtttcgttttgctt 132
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 504,785
Number of extensions: 33288
Number of successful extensions: 33288
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 33277
Number of HSP's successfully gapped: 1
Length of query: 3391
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3373
Effective length of database: 8,109,745
Effective search space: 27354169885
Effective search space used: 27354169885
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)