BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN09405 (UTR included)
(1546 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_335_C2 86 2e-16
BF01047B2H03 84 8e-16
BF01031B2E06 76 2e-13
>BF14_335_C2
Length = 1827
Score = 85.7 bits (43), Expect = 2e-16
Identities = 94/111 (84%)
Strand = Plus / Minus
Query: 449 aaacatatatttatattcgcgaattttaaagctcgttgtgctaacagagctcatgattcc 508
|||||||| | | ||||||||||||||||||| || | ||||| ||||| | | ||||
Sbjct: 1279 aaacatatttctgtattcgcgaattttaaagcgcgctacgctaatagagcctacggttcc 1220
Query: 509 tcgggaaatcaacatccccaaagaccatgccatcaaggtcaacaagtatta 559
| || | | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1219 ttggaagaccaacatccccaaaaaccatgccatcaaggtcaacaagtatta 1169
>BF01047B2H03
Length = 758
Score = 83.8 bits (42), Expect = 8e-16
Identities = 122/146 (83%), Gaps = 2/146 (1%)
Strand = Plus / Minus
Query: 335 aaacgtcaagccttactctatcataaaagcggcttcgaattggactataatgatagttac 394
|||| ||||||||||||||||| | ||||||| |||| |||| |||||||| || | |||
Sbjct: 145 aaacatcaagccttactctatccttaaagcggtttcggattgcactataatcatggatac 86
Query: 395 gtatgagaagcaatataaaatcccagaggatatttgtgagtcggcgtctagaccaaacat 454
||||| | | | ||| |||||||| ||| ||| ||||| ||||| || |||||| ||||
Sbjct: 85 gtatggggaacgatacaaaatccccgagcata-ttgtgtgtcggtttccagaccagacat 27
Query: 455 atatt-tatattcgcgaattttaaag 479
|| || ||||||||||||||||||||
Sbjct: 26 attttatatattcgcgaattttaaag 1
>BF01031B2E06
Length = 707
Score = 75.8 bits (38), Expect = 2e-13
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 513 gaaatcaacatccccaaagaccatgccatcaaggtcaacaagtattacga 562
|||| |||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 436 gaaaccaacatccccaaagaccatgccatcaagatcaataagtattacga 485
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 161,269
Number of extensions: 3448
Number of successful extensions: 3448
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3446
Number of HSP's successfully gapped: 3
Length of query: 1546
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1529
Effective length of database: 8,119,229
Effective search space: 12414301141
Effective search space used: 12414301141
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)