BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN09924 (UTR included)
(1447 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01037B1H08 109 1e-23
BF01023A2A12 105 2e-22
BF01062A1A05 100 1e-20
BF01056B1D02 98 5e-20
BF01031B1E12 86 2e-16
>BF01037B1H08
Length = 758
Score = 109 bits (55), Expect = 1e-23
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 204 gagcaggcgtggtgatttatgctctaaccttcttcatgtgagaagaggcctttgctcagc 263
||||| |||||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 260 gagcaagcgtggtgcttaatgctctaaccttctacatgtgagaagaggcctttgctcagc 319
Query: 264 agtgggctccgatag 278
||||||||||||||
Sbjct: 320 tgtgggctccgatag 334
>BF01023A2A12
Length = 723
Score = 105 bits (53), Expect = 2e-22
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 210 gcgtggtgatttatgctctaaccttcttcatgtgagaagaggcctttgctcagcagtggg 269
||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||| |
Sbjct: 262 gcgtggtgattaatgctctaaccttctccatgtgataagaggcctttgctcagcagtgag 321
Query: 270 ctccgatag 278
|||||||||
Sbjct: 322 ctccgatag 330
>BF01062A1A05
Length = 777
Score = 99.6 bits (50), Expect = 1e-20
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 204 gagcaggcgtggtgatttatgctctaaccttcttcatgtgagaagaggcctttgctcagc 263
||||| ||||||||||| ||||||||||||||| | |||||||||||||||||||| |||
Sbjct: 517 gagcaagcgtggtgattaatgctctaaccttctccttgtgagaagaggcctttgcttagc 576
Query: 264 agtgggctcc 273
||||||||||
Sbjct: 577 agtgggctcc 586
>BF01056B1D02
Length = 778
Score = 97.6 bits (49), Expect = 5e-20
Identities = 69/75 (92%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 204 gagcaggcgtggtgatttatgctctaaccttcttcatgtgagaagaggcctttgctcagc 263
||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct: 657 gagcaagcgtggtggttaatgctctaaccttc---atgtgagaagaggcctttgctcagc 713
Query: 264 agtgggctccgatag 278
|||||||||||||||
Sbjct: 714 agtgggctccgatag 728
>BF01031B1E12
Length = 730
Score = 85.7 bits (43), Expect = 2e-16
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 204 gagcaggcgtggtgatttatgctctaaccttcttcatgtgagaagaggcctttgctcagc 263
||||| ||||||||||| ||||||||||||||| | ||||||||| || ||||||||||
Sbjct: 130 gagcaagcgtggtgattaatgctctaaccttctccgtgtgagaag-gggatttgctcagc 188
Query: 264 agtgggctccgatag 278
|||||||||||||||
Sbjct: 189 agtgggctccgatag 203
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 220,376
Number of extensions: 5636
Number of successful extensions: 5636
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 5634
Number of HSP's successfully gapped: 5
Length of query: 1447
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1430
Effective length of database: 8,119,229
Effective search space: 11610497470
Effective search space used: 11610497470
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)