BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN10078 (UTR included)
(3584 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01040B2G02 274 9e-73
>BF01040B2G02
Length = 883
Score = 274 bits (138), Expect = 9e-73
Identities = 240/270 (88%), Gaps = 3/270 (1%)
Strand = Plus / Plus
Query: 3313 ccccatcggacgccggctgcagtctaaccaccggagatgtgtcctggcccacagttagac 3372
||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||
Sbjct: 114 ccccatcggacgccggctggagtctaaccaccggggacgtgtcctggccaacagttagac 173
Query: 3373 tcgctccgtccgataaaacacccggacacgatcacatagaatttcaccaccgcaggctgg 3432
|| | |||||||| || ||||||| ||||| ||| | || |||||| |||| | ||||
Sbjct: 174 tcaccccgtccgaccaa-cacccgggcacgaccacctgga-tttcactgccgccgactgg 231
Query: 3433 aggcagcccattcgagaccca-gtctctggaccacgcctcgcccgcggccttcctaacat 3491
||||||||||||||||||| | |||||||| |||| ||||||||| ||||||||| | ||
Sbjct: 232 aggcagcccattcgagacctaagtctctgggccactcctcgcccgtggccttcctgatat 291
Query: 3492 gacaccagggctgcaaacgcccgccccaacgacccgtctgcattcacaggcggagtcgca 3551
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct: 292 gacaccagggctgcaaacgcccgccccaacgatccgtctgcattcacaggcggagttgta 351
Query: 3552 gccagctcagggggccaacgccccgaaaag 3581
|||||||||| |||||||||||| ||||||
Sbjct: 352 gccagctcagagggccaacgccctgaaaag 381
Score = 143 bits (72), Expect = 2e-33
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 2764 cgcgagccgcgcgtgctctcctgcgacccgttctccgatccgatctccccctccgagcca 2823
||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct: 572 cgcgagccgcgcgtgttctcctgcgaccagttctccgatcggatctccccctccgagcta 631
Query: 2824 agctggccgtctacaagacatacataagatcgcacctaacatacgccgctcccgcctggt 2883
||||||| ||||||||||| |||| | ||||| |||||| |||| ||||||||||| ||
Sbjct: 632 agctggcagtctacaagactaacatcaaatcgcgcctaacttacgtcgctcccgcctagt 691
Query: 2884 atgc 2887
||||
Sbjct: 692 atgc 695
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 192,425
Number of extensions: 2414
Number of successful extensions: 2414
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2412
Number of HSP's successfully gapped: 2
Length of query: 3584
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3566
Effective length of database: 8,109,745
Effective search space: 28919350670
Effective search space used: 28919350670
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)