BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN10244 (UTR included)
(2005 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01057A2A02 414 e-115
BF01042A2B06 78 6e-14
BF01049B2H03 74 1e-12
BF01022A1G02 68 6e-11
BF14_2249_C1 68 6e-11
>BF01057A2A02
Length = 257
Score = 414 bits (209), Expect = e-115
Identities = 209/209 (100%)
Strand = Plus / Plus
Query: 1322 gccatttcatcatttcccccctcctccattcgggccacctggctttggcccgccaccccc 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gccatttcatcatttcccccctcctccattcgggccacctggctttggcccgccaccccc 72
Query: 1382 tcctggagcgaggcccccaccatggaggccacccccaccgtctttcaggccccaataccg 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tcctggagcgaggcccccaccatggaggccacccccaccgtctttcaggccccaataccg 132
Query: 1442 accgccaccgtttggtcatccccccttcccgcaccacccgcctgaaccaaactataacta 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 accgccaccgtttggtcatccccccttcccgcaccacccgcctgaaccaaactataacta 192
Query: 1502 ttaagtctttaagaaatatagggtaattt 1530
|||||||||||||||||||||||||||||
Sbjct: 193 ttaagtctttaagaaatatagggtaattt 221
>BF01042A2B06
Length = 781
Score = 77.8 bits (39), Expect = 6e-14
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 164 ataaatagtaaaatgatgcgtagtaatccgaaaatattagtttcatgtaaatgattactt 223
||||||| | |||| | |||||||||||||||||||||| ||| || |||| || ||||
Sbjct: 292 ataaataattaaataacgcgtagtaatccgaaaatattactttaatttaaacgaatactc 351
Query: 224 gcgaaagtcttagatctcattat 246
||||||||||| |||||||||||
Sbjct: 352 gcgaaagtctttgatctcattat 374
>BF01049B2H03
Length = 832
Score = 73.8 bits (37), Expect = 1e-12
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 184 tagtaatccgaaaa-tattagtttcatgtaaatgattacttgcgaaagtcttagatctca 242
|||||||||||||| |||||||||||| ||||||| |||| || ||| ||||||||||||
Sbjct: 292 tagtaatccgaaaaatattagtttcatttaaatgaatactcgctaaaatcttagatctca 351
Query: 243 ttata 247
|||||
Sbjct: 352 ttata 356
>BF01022A1G02
Length = 638
Score = 67.9 bits (34), Expect = 6e-11
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 181 gcgtagtaatccgaaaatattagtttcatgtaaatgattacttgcgaaagtcttagatct 240
||||||||||||||||||||||| ||||| ||||||| ||| || |||||||| ||||
Sbjct: 563 gcgtagtaatccgaaaatattagcttcatttaaatgaacactcccgcaagtcttaaatct 504
Query: 241 cattat 246
||||||
Sbjct: 503 cattat 498
>BF14_2249_C1
Length = 1315
Score = 67.9 bits (34), Expect = 6e-11
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 181 gcgtagtaatccgaaaatattagtttcatgtaaatgattacttgcgaaag 230
|||||| |||||||||||||||||||||| ||||||| |||||| |||||
Sbjct: 380 gcgtagcaatccgaaaatattagtttcatttaaatgaatacttgtgaaag 331
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 276,379
Number of extensions: 19354
Number of successful extensions: 19354
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 19353
Number of HSP's successfully gapped: 5
Length of query: 2005
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1988
Effective length of database: 8,119,229
Effective search space: 16141027252
Effective search space used: 16141027252
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)