BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN10288 (UTR included)
(1303 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01049B2H12 605 e-173
>BF01049B2H12
Length = 788
Score = 605 bits (305), Expect = e-173
Identities = 366/385 (95%), Gaps = 1/385 (0%)
Strand = Plus / Plus
Query: 413 tcggaaccaagtgaaatatttaaagtgcatggaaagaggaccaaatttttttacgacttt 472
|||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct: 231 tcggaaccaagtgaaatatttaaagtgcatggaaagaggaccaaatggttaaatgacttc 290
Query: 473 ttaatatacaaaaatatatttaataacaatggaggagtttcttcgtatgaacgaaaccat 532
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttaatatacaaaa-tatatttaataacaatggaggagtttcttcgtatgaacgaaacagc 349
Query: 533 ggatcagttttatacgcggtgcacaaacctgagtgtctttgattgcagtgaagacgagat 592
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 350 ggagcagttctatacgcggtgcacgaacctgagtgtctttgattgcagtgaagacgagat 409
Query: 593 gctctggtggataatgggtcctcgaaggttaccgttgtcgaggatagttccaatcagcgt 652
||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct: 410 gctatggtggataatgggccctcgaaggtttcctctgtcgaggatagttccaatcagcgt 469
Query: 653 gttcctcttgatgatatttgtgacaggagtcgttgggaacatcgctgtgtgtgtcgtcat 712
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 470 gttcctcttgatgatatttgtgactggagtcgttgggaacatcgctgtgtgtgtcgtcat 529
Query: 713 cgtcagacatccatccatgcacacggacaccaactactacctcttcagcctggctctgtc 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cgtcagacatccatccatgcacacggacaccaactactacctcttcagcctggctctgtc 589
Query: 773 tgacctcttgttactcttgtttggt 797
|||||||||||||||||||||||||
Sbjct: 590 tgacctcttgttactcttgtttggt 614
Score = 155 bits (78), Expect = 2e-37
Identities = 155/178 (87%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 182 gctacgaaacgctacgaatataacgatctaagttgaacgataaaatgattagcttataaa 241
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 26 gctacgacacgctacgaatataacgatctaagttgaaggataaaattattagcttataaa 85
Query: 242 taaagaaactgtggagtaga-atttcttaataacaaggaaagtaaagaaaaatgaaaaat 300
|||||||||| || || || || | || |||| ||| ||||| |||||||||| || |
Sbjct: 86 taaagaaactatgtagaggagatctttttataataagtgaagtatagaaaaatgataatt 145
Query: 301 taagatttttgtaaattacatgtttatattattgtaataattttgtcgtatttcaaat 358
|| |||||||| |||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct: 146 gaacatttttgtgaattacatttttatattgttgtaa-aattttgtcgtatttcaaat 202
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 223,357
Number of extensions: 6053
Number of successful extensions: 6053
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 6051
Number of HSP's successfully gapped: 3
Length of query: 1303
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1286
Effective length of database: 8,119,229
Effective search space: 10441328494
Effective search space used: 10441328494
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)