BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN10408 (UTR included)
(1807 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_3046_C1 82 4e-15
BF01049B2B11 78 6e-14
BF01044A1D01 72 3e-12
BF01031B2H11 68 5e-11
>BF14_3046_C1
Length = 1016
Score = 81.8 bits (41), Expect = 4e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 237 ttataattcattcaataaataaaaacgttgacattggcaaagtattccacaattccagtg 296
||||||||| | ||| ||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 940 ttataattcctccaacaaataaaaacgttgacattggcaaaatattccacgattccagtg 999
Query: 297 tgaatgaagccat 309
||| ||||||||
Sbjct: 1000 cgaa-gaagccat 1011
>BF01049B2B11
Length = 780
Score = 77.8 bits (39), Expect = 6e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 236 attataattcattcaataaataaaaacgttgacattggcaaagtattccacaattccagt 295
|||||||||||| ||| |||||||||||| |||||| ||||| |||||||| |||||||
Sbjct: 14 attataattcatccaacaaataaaaacgtcgacattagcaaaatattccacgattccaga 73
Query: 296 gtgaatgaagc 306
| |||||||||
Sbjct: 74 gcgaatgaagc 84
>BF01044A1D01
Length = 742
Score = 71.9 bits (36), Expect = 3e-12
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 254 aataaaaacgttgacattggcaaagtattccacaattccagtgtgaatgaagccat 309
|||||||||||||||||||||| | |||||||| ||||||||| |||||||||||
Sbjct: 246 aataaaaacgttgacattggcagaatattccacgattccagtgcaaatgaagccat 191
>BF01031B2H11
Length = 675
Score = 67.9 bits (34), Expect = 5e-11
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 224 acagtattcaaaattataattcattcaataaataaaaacgttgacattggcaaagtattc 283
|||||||| |||||||||||| ||||| ||||||||| || |||||| || | |||||
Sbjct: 496 acagtatttaaaattataattagttcaagaaataaaaatgtcgacatttgcttattattc 555
Query: 284 cacaattccagtgtgaatgaagccat 309
||||||| ||| |||||| |||||||
Sbjct: 556 cacaatttcagcgtgaattaagccat 581
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 282,257
Number of extensions: 6892
Number of successful extensions: 6892
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 6892
Number of HSP's successfully gapped: 4
Length of query: 1807
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1790
Effective length of database: 8,119,229
Effective search space: 14533419910
Effective search space used: 14533419910
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)