BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN10460 (UTR included)
(1462 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01047B2H03 137 6e-32
BF01058A1C03 78 4e-14
BF01042A2B06 78 4e-14
BF01012B1G11 70 1e-11
>BF01047B2H03
Length = 758
Score = 137 bits (69), Expect = 6e-32
Identities = 253/313 (80%), Gaps = 1/313 (0%)
Strand = Plus / Minus
Query: 627 acttgctatatctgtgggaaggcagttggaacagctaggcacttgttagtgggatgtaag 686
|||||||||||||| | | |||||||||||| ||| ||| ||| | ||||||||| |
Sbjct: 364 acttgctatatctgcgaggaggcagttggaattgctgagcatttgctgatgggatgtagg 305
Query: 687 gtactcctcgatagcggtcaatactcgcg-tcgtcacgatagggctctggaaatcatacg 745
||||||| |||||||||||||||| || || || ||||||| | | | ||||||
Sbjct: 304 ctactcctggatagcggtcaatactaccggtctccatgatagggttttaaatttcataca 245
Query: 746 tgaagcggttagtctttcagtagccagagcgcaaaaggaaataaccaaaaacgagcgatc 805
||||||||||||| ||| |||| || ||| |||| |||||||||| ||||| |||||
Sbjct: 244 tgaagcggttagtattttggtagtcattgcggaaaaagaaataaccacaaacgggcgatt 185
Query: 806 agtaggttttgtgagagggggcactagggctataaaaacaaatgtcaagccctactccat 865
| | ||||||||||||| | || |||||||||||| |||| ||||||| ||||| ||
Sbjct: 184 aattggttttgtgagagaagacattagggctataaagtcaaacatcaagccttactctat 125
Query: 866 ccttaaagcggctacggattggactataatgatggatacgtgtgaaaaacaatacaaaat 925
||||||||||| | ||||||| |||||||| |||||||||| || ||| |||||||||
Sbjct: 124 ccttaaagcggtttcggattgcactataatcatggatacgtatggggaacgatacaaaat 65
Query: 926 ccccgaggatatt 938
||||||| |||||
Sbjct: 64 ccccgagcatatt 52
>BF01058A1C03
Length = 779
Score = 77.8 bits (39), Expect = 4e-14
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 540 ttcgcgagtattcatttaaatgcaactaatattttcggattac 582
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 523 ttcgcgagtattcatttaaatgaaactaatattttcggattac 481
Score = 69.9 bits (35), Expect = 1e-11
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 1313 ttcgcgactattcatttaaatgcaactaatattttcggattac 1355
||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 523 ttcgcgagtattcatttaaatgaaactaatattttcggattac 481
>BF01042A2B06
Length = 781
Score = 77.8 bits (39), Expect = 4e-14
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 535 agactttcgcgagtattcatttaaatgcaactaatattttcggattactgcgcgttatt 593
|||||||||||||||||| ||||||| || |||||||||||||||||| |||||||||
Sbjct: 361 agactttcgcgagtattcgtttaaattaaagtaatattttcggattactacgcgttatt 303
>BF01012B1G11
Length = 697
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 538 ctttcgcgagtattcatttaaatgcaactaatattttcg 576
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 631 ctttcgcgagtattcatttaaatgtaactaatattttcg 593
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 296,354
Number of extensions: 7687
Number of successful extensions: 7687
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 7687
Number of HSP's successfully gapped: 5
Length of query: 1462
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1445
Effective length of database: 8,119,229
Effective search space: 11732285905
Effective search space used: 11732285905
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)