BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN10871 (UTR included)
(2434 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01017B2A11 993 0.0
>BF01017B2A11
Length = 742
Score = 993 bits (501), Expect = 0.0
Identities = 538/549 (97%), Gaps = 1/549 (0%)
Strand = Plus / Plus
Query: 1887 accatagatgcgttcaaaagcataatatccgtgtacagcgcacactagcaccgagggcgg 1946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accatagatgcgttcaaaagcataatatccgtgtacagcgcacactagcaccgagggcgg 60
Query: 1947 acagttaagttgcattagtgatttttgtaagttaattttaagatagcaatcgagacttcg 2006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acagttaagttgcattagtgatttttgtaagttaattttaagatagcaatcgagacttcg 120
Query: 2007 tacgtctaactgacattt-aaaaacgttcttgaatggtgcttcatattatataacattaa 2065
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tacgtctaactgacattttaaaaacgttcttgaatggtgcttcatattatataacattaa 180
Query: 2066 ctggtcgcgtgtggtccgttaggttattgttaattggattattgtatttcgatagcattc 2125
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccggtcgcgtgtggtccgttaggttattgttaattggattattgtatttcgatagcattc 240
Query: 2126 ccaaatgcggcgctgttttaataggagctgtcttagctttattaggtgtttgaacgatgt 2185
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccaaatgcggcgctgttttaataagagctgtcttagctttattaggtgtttgaacgatgt 300
Query: 2186 ctcatgttacgtggttacggtgcgcccacccacataatgacgtgatattcttataaataa 2245
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcatgttaagtggttacggtgcgcccacccacataatgacgtgatattcttataaataa 360
Query: 2246 ttgatattaataaaaaaatataatttaagggattcggataaacatctcaaaatttttttt 2305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttgatattaataaaaaaatataatttaagggattcggataaacatctcaaaatttttttt 420
Query: 2306 ttaaatacttcattttaaccacatacgtcattgtaatttcctgtttagatcaaaatgtaa 2365
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttaatacttcattttaactacatacgtcattgtaatttcctgtttagatcaaaatgtaa 480
Query: 2366 aaaataattatagttctaactgccgtctgaaatgtttgcaacggattcgtggacaaagct 2425
|||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaaaaatatatagttctggctgccgtctgaaatgtttgcaacggattcgtggacaaagct 540
Query: 2426 cttaagata 2434
|||||||||
Sbjct: 541 cttaagata 549
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 315,815
Number of extensions: 7373
Number of successful extensions: 7373
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 7371
Number of HSP's successfully gapped: 1
Length of query: 2434
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2417
Effective length of database: 8,119,229
Effective search space: 19624176493
Effective search space used: 19624176493
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)