BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN10881 (UTR included)
(3445 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01029B2C12 1417 0.0
BF01013A1D06 1302 0.0
>BF01029B2C12
Length = 767
Score = 1417 bits (715), Expect = 0.0
Identities = 739/747 (98%), Gaps = 2/747 (0%)
Strand = Plus / Plus
Query: 2699 gcgatcccgttgtaacggacgtcaaatcaactcgtggctccaggaagtcgatgataaatg 2758
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 gcgatcccgttgtaacggacgtcaaatcaactcgtnnntccaggaagtcgatgataaatg 60
Query: 2759 ggagaagatcaaggaaggtatgcttcgccgtcagcatacggaagctgagaccttacacgc 2818
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 ggagaagatcaaggaaggtatgcttcgccgtcagcatacggaagctgaaaccttacacgc 120
Query: 2819 agtacagatcatgggatgggaatggaaattaaaagaacacggtctgtgcgactacaagtc 2878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtacagatcatgggatgggaatggaaattaaaagaacacggtctgtgcgactacaagtc 180
Query: 2879 cacgccgaagatagatccgacacacgtaccacagatacacgtgtcgaattttgacttgcc 2938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cacgccgaagatagatccgacacacgtaccacagatacacgtgtcgaattttgacttgcc 240
Query: 2939 cgcttgaattttatgttcatattgcctgtgttcatgtaaggctggcactaaacttgtgct 2998
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 241 cgcttgaattttatgttcatattgcctgtgttcatgtaaggccggcactaaacttgtgct 300
Query: 2999 ggcataaatttatttatcattattaagatctttacactttttaacatcgattggtaatac 3058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggcataaatttatttatcattattaagatctttacactttttaacatcgattggtaatac 360
Query: 3059 gactcaagcggagctacaaaattggattataataacatttcaaaattttcatcgactttc 3118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gactcaagcggagctacaaaattggattataataacatttcaaaattttcatcgactttc 420
Query: 3119 gtcgaccctttctgggactcctgctctccacgcgccgttaacggatgatacttgacgcgg 3178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtcgaccctttctgggactcctgctctccacgcgccgttaacggatgatacttgacgcgg 480
Query: 3179 aaattaattattaccaactatttaatgctttatatatatataaagtgttagcatgtaaag 3238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaattaattattaccaactatttaatgctttatatatatataaagtgttagcatgtaaag 540
Query: 3239 aaatcatcctttatcggagtgtggtgtattatattatagttttgaagtcttataccaggc 3298
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaatcatcttttatcggagtgtggtgtattatattatagttttgaagtcttataccaggc 600
Query: 3299 tctcttgacctgagaatcatcttctgtatatatatcacgatctaatacgtttatttttaa 3358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tctcttgacctgagaatcatcttctgtatatatatcacgatctaatacgtttatttttaa 660
Query: 3359 tgtgattgaatgatttttttttttaaatgccgttagttaggttctataataaggtttaat 3418
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgtgattgaatga--tttttttttaaatgccgttagttaggttctataataaggtttaat 718
Query: 3419 tcattgcgatttaccttttttattcta 3445
|||||||||||||||||||||||||||
Sbjct: 719 tcattgcgatttaccttttttattcta 745
>BF01013A1D06
Length = 775
Score = 1302 bits (657), Expect = 0.0
Identities = 707/729 (96%), Gaps = 21/729 (2%)
Strand = Plus / Plus
Query: 1227 gatggaacatcacagctgagtagtggtgttgtatcctctactcaggatgaagtcaatcct 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 gatggaacatcacagctgagtagtggtgttgtatcctctactcaggatgaagtcaatcct 106
Query: 1287 ggcaacaagaggttgtatacagaagacggtcaagaggcagatgtgacagaggaagatgtt 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ggcaacaagaggttgtatacagaagacggtcaagaggcagatgtgacagaggaagatgtt 166
Query: 1347 tcaaaacggaagaagagaaaagacaatgaagaaaaggaacccatggccaaaccagcacct 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tcaaaacggaagaagagaaaagacaatgaagaaaaggaacccatggccaaaccagcacct 226
Query: 1407 gtggctcgaggtggtgccggccgcaaacctccggggccggcaagtaagacgggcgcacag 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gtggctcgaggtggtgccggccgcaaacctccggggccggcaagtaagacgggcgcacag 286
Query: 1467 ccgttgggcaaaggagcacagaacacaaagggcgcgggttcttcttctggaaaaggtgcg 1526
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ccgttgggcaaaggagcgcagaacacaaagggcgcgggttcttcttctggaaaaggtgcg 346
Query: 1527 caggcgcaggggaaggggggcggcgccaatgccaaagctaacgcgcagggatctcatcag 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 caggcgcaggggaaggggggcggcgccaatgccaaagctaacgcgcagggatctcatcag 406
Query: 1587 ggtaaatcaggaggtgcaaagggagcatcagggtcacaagctggcaaacaagatcggaag 1646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggtaaatcaggaggtgcaaagggagcatcagggtcacaagctggcaaacaagatcggaag 466
Query: 1647 agtccagtcgcaagcccgaagccaaatcagggtaaggatgacgacgaggactccaaaagc 1706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 agtccagtcgcaagcccgaagccaaatcagggtaaggatgacgacgaggactccaaaagc 526
Query: 1707 caggaatcgtccgcaccgaaagtgccacccctgaagatagtaataccaggaggggcgggt 1766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 caggaatcgtccgcaccgaaagtgccacccctgaagatagtaataccaggaggggcgggt 586
Query: 1767 ggttccggaagtcgtaatgaacaggaaggcga---------------------tggcagt 1805
|||||||||||||||||||||||||||||||| |||||||
Sbjct: 587 ggttccggaagtcgtaatgaacaggaaggcgatgcaccccaaagaagggcaagtggcagt 646
Query: 1806 acgggtcagcgtggtggaggcaagggtcgtggtagcctgtcaacgctgccatatgtcatc 1865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 acgggtcagcgtggtggaggcaagggtcgtggtagcctgtcaacgctgccatatgtcatc 706
Query: 1866 ccatgcaccagcgctgacactggacagacatcagacagctctgacaactgtgaagacaag 1925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ccatgcaccagcgctgacactggacagacatcagacagctctgacaactgtgaagacaag 766
Query: 1926 cgaactggg 1934
|||||||||
Sbjct: 767 cgaactggg 775
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 363,659
Number of extensions: 12461
Number of successful extensions: 12461
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 12460
Number of HSP's successfully gapped: 3
Length of query: 3445
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3427
Effective length of database: 8,109,745
Effective search space: 27792096115
Effective search space used: 27792096115
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)