BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11032 (UTR included)
(2449 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01012A1F03 876 0.0
BF01027B1D01 763 0.0
BF01060B1D11 234 5e-61
BF01047B2H03 188 3e-47
>BF01012A1F03
Length = 842
Score = 876 bits (442), Expect = 0.0
Identities = 454/458 (99%)
Strand = Plus / Plus
Query: 769 ttgtggaggaaccggaattcaccgatgtcatccaaaatgtgacagttccggccggccgta 828
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgttgaggaaccggaattcaccgatgtcatccaaaatgtgacagttccggccggccgta 444
Query: 829 gtgtgcgattggcatgctccgtcaagaatcttggttcttacaaggttgcatggatgcact 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgtgcgattggcatgctccgtcaagaatcttggttcttacaaggttgcatggatgcact 504
Query: 889 tcgaacaatcagcgattttgactgtacacaaccacgtgataacccgcaatccgcgcgtta 948
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 505 tcgaacaatcagcgattttgactgtacacaaccacgtgataacccgcaatccacgtgtta 564
Query: 949 gtgtcacccacgataaacaccgcacgtggttcctccacatatcagacgtaagggaggaag 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgtcacccacgataaacaccgcacgtggttcctccacatatcagacgtaagggaggaag 624
Query: 1009 acagaggtcgatacatgtgccaaataaacacagttaccgctaaaacacaatttggatacc 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acagaggtcgatacatgtgccaaataaacacagttaccgctaaaacacaatttggatacc 684
Query: 1069 tccacgtcgttgtccccccgtccattgacgactcgttgagctcgagcgacgttatcgtcc 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccacgtcgttgtccccccgtccattgacgactcgttgagctcgagcgacgttatcgtcc 744
Query: 1129 gagagggcgccaatgtcactctgatgtgtcgcgctaatggctctcctaagcccaccatca 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gagagggcgccaatgtcactctgatgtgtcgcgctaatggctctcctaagcccaccatca 804
Query: 1189 agtggaagcgagatgacaattcaaaaatctccatcagt 1226
||||||| ||||||||||||||||||||||||||||||
Sbjct: 805 agtggaaacgagatgacaattcaaaaatctccatcagt 842
>BF01027B1D01
Length = 786
Score = 763 bits (385), Expect = 0.0
Identities = 398/402 (99%), Gaps = 4/402 (0%)
Strand = Plus / Plus
Query: 2052 ttacaaatattatgcactttgcacctctgggtaaaaatatagcgtaaattattttaagaa 2111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttacaaatattatgcactttgcacctctgggtaaaaatatagcgtaaattattttaagaa 60
Query: 2112 aattttataattttgcacaaactgcttggctatcaaagtatatggggtatataaaaataa 2171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattttataattttgcacaaactgcttggctatcaaagtatatggggtatataaaaataa 120
Query: 2172 tgcttatgtggccgtaaagacaaaaattcaagactttaagttacatttagtcgcgttggt 2231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcttatgtggccgtaaagacaaaaattcaagactttaagttacatttagtcgcgttggt 180
Query: 2232 agagacgttaatttaattaagataaatttttcttcggaaacaggtaacgtagttttaata 2291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agagacgttaatttaattaagataaatttttcttcggaaacaggtaacgtagttttaata 240
Query: 2292 aattaggaaatttgtaatctcatagaagagaggggatcttaagttgtaaacaa----ata 2347
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 241 aattaggaaatttgtaatctcatagaagagaggggatcttaagttgtaaacaaatatata 300
Query: 2348 tatatatatataatagcatattatgtaaaaatgttgttattgattacatatactatatat 2407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatatatatataatagcatattatgtaaaaatgttgttattgattacatatactatatat 360
Query: 2408 ttacgtaatgtataaatgttccttaaaaatgtctcgatttag 2449
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttacgtaatgtataaatgttccttaaaaatgtctcgatttag 402
>BF01060B1D11
Length = 799
Score = 234 bits (118), Expect = 5e-61
Identities = 241/278 (86%), Gaps = 3/278 (1%)
Strand = Plus / Minus
Query: 493 tcataaagatgttgaagttgtggctcgggctcgctctaacggctgattcatcggctttat 552
|||||||| ||||||| ||||||||| ||||||| | || ||||| | |||||||||
Sbjct: 668 tcataaag-tgttgaatttgtggctccggctcgcgacatcgactgatacgtcggctttaa 610
Query: 553 tcagggatcgcaatagttttgggatgagtctaaaagggccatccgagttctataaacacc 612
| ||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 609 ttagggatcgcaatagttttgggatgagtctaaaaaggccatcggagctctataaacact 550
Query: 613 tgagagtttccaagagatatatcctggggaaatcccatgatgacgtcgttacatcgctcc 672
| ||||||||||||||| |||||| ||||||| ||||| |||| ||| ||||||| ||||
Sbjct: 549 taagagtttccaagagacatatcccggggaaagcccataatgatgtcattacatcactcc 490
Query: 673 caaaagacaaagatgccccagagctagagtc-aaggcttcaattccacaagcagtttatg 731
||||| | ||||| |||||| ||| |||| || |||||||||||||| |||||||||
Sbjct: 489 caaaaaccggagatggcccagaactaaagtctgagacttcaattccacaaacagtttatg 430
Query: 732 ataggagcacaaagtaacg-gagtagggttaggatcaa 768
||||||||||||||||||| ||||||| ||||||||||
Sbjct: 429 ataggagcacaaagtaacgagagtaggattaggatcaa 392
>BF01047B2H03
Length = 758
Score = 188 bits (95), Expect = 3e-47
Identities = 171/195 (87%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 575 gatgagtctaaaagggccatccgagttctataaacacctgagagtttccaagagatatat 634
||||||||||||| ||||||| ||| ||||||||||| | ||||||||||||||| ||||
Sbjct: 758 gatgagtctaaaaaggccatcggagctctataaacacttaagagtttccaagagacatat 699
Query: 635 cctggggaaatcccatgatgacgtcgttacatcgctcccaaaagacaaagatgccccaga 694
|| ||||||| ||||| |||| ||| ||||||| ||| ||||| | | ||||||||| ||
Sbjct: 698 cccggggaaagcccataatgatgtcattacatcactctcaaaaaatagagatgcccctga 639
Query: 695 gctagagtcaaggcttcaattccacaagcagtttatgataggagcacaaagtaacg-gag 753
||| ||||||| ||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct: 638 actaaagtcaagacttcaattccataaacagtttatgataggagcacaaagtaacgagag 579
Query: 754 tagggttaggatcaa 768
|||| ||||||||||
Sbjct: 578 taggattaggatcaa 564
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 297,117
Number of extensions: 11277
Number of successful extensions: 11277
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 11272
Number of HSP's successfully gapped: 4
Length of query: 2449
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2432
Effective length of database: 8,119,229
Effective search space: 19745964928
Effective search space used: 19745964928
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)