BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11076 (UTR included)
(2743 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_2086_C1 1146 0.0
>BF14_2086_C1
Length = 2034
Score = 1146 bits (578), Expect = 0.0
Identities = 601/606 (99%), Gaps = 2/606 (0%)
Strand = Plus / Minus
Query: 2052 ttctccttgactttgggagtggcagtcggtggcatgatatttccagataacatcactgga 2111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 ttctccttgactttgggagtggcagtcggtggcatgatatttccagataacatcactgga 1730
Query: 2112 acagtaggggtgaaaccatggcgcaataaagaaagaagagcgctacagaaattctggaag 2171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 acagtaggggtgaaaccatggcgcaataaagaaagaagagcgctacagaaattctggaag 1670
Query: 2172 gacctcccgaattggtaccaaacttggacccaacctttattaatagattacgtcaaaata 2231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1669 gacctcccgaattggtaccaaacttggacccaacctttattaatagattacgtcaaaata 1610
Query: 2232 agtgccctataaagaaagaaagcattttt-acatacattctcatgattttttaaaataaa 2290
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1609 agcgccctataaagaaagaaagcattttttacatacattctcatgattttttaaaataaa 1550
Query: 2291 ttttttaaagcgacaagttttcaagttttttttttgtttattgattttatttgcgactag 2350
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1549 ttttttaaagcgacaagttttcaagttttttttt-gtttattgattttatttgcgactag 1491
Query: 2351 agatccttattacaagaggaacttcttattaaagatgtataaagtataaataaaaagtag 2410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 agatccttattacaagaggaacttcttattaaagatgtataaagtataaataaaaagtag 1431
Query: 2411 tattatagataggacatatggttttcaactgactttaggaagaatgattcaaagagctgt 2470
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1430 tattatagataggacatatgtttttcaactgactttaggaagaatgattcaaagagctgt 1371
Query: 2471 aactctaacgtaatctacgagtaaagctggctgtctccacgtcggaagccaagaagacat 2530
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1370 aactctaacgtaatctacgagtaaagctggctgtctccacgtcggaagccaagacgacat 1311
Query: 2531 gtcttgccaaaatcttaaactagccttgcgaccagtgtttctccacggttttggtattcc 2590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 gtcttgccaaaatcttaaactagccttgcgaccagtgtttctccacggttttggtattcc 1251
Query: 2591 ttgggacgttacgtcatcatcgaattcagtaactccacccgtcgtcaaacccaatgtaag 2650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 ttgggacgttacgtcatcatcgaattcagtaactccacccgtcgtcaaacccaatgtaag 1191
Query: 2651 gaagaa 2656
||||||
Sbjct: 1190 gaagaa 1185
Score = 123 bits (62), Expect = 2e-27
Identities = 65/66 (98%)
Strand = Plus / Minus
Query: 1986 aactgtcgcaagaattggtttgaacttctcggtacagggggcaagatggctccatttgat 2045
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2034 aactgtcgcaagaattggtttgaacttctcggtacagggggtaagatggctccatttgat 1975
Query: 2046 catcac 2051
||||||
Sbjct: 1974 catcac 1969
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 400,141
Number of extensions: 8197
Number of successful extensions: 8197
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 8193
Number of HSP's successfully gapped: 2
Length of query: 2743
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2726
Effective length of database: 8,119,229
Effective search space: 22133018254
Effective search space used: 22133018254
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)