BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11090 (UTR included)
(1609 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01051A2C01 1261 0.0
>BF01051A2C01
Length = 688
Score = 1261 bits (636), Expect = 0.0
Identities = 678/690 (98%), Gaps = 3/690 (0%)
Strand = Plus / Plus
Query: 541 acatccgctcatccaatacagcaacta-gtttccgaagattagtgaaagtggcgtttagt 599
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 acatccgctcatccaatacagcaactncgtttccgaagattagtgaaagtggcgtttagt 60
Query: 600 gataaatatttattgtatacaaatgttacgatatctgtgagtctatcatctgttggtgat 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gataaatatttattgtatacaaatgttacgatatctgtgagtctatcatctgttggtgat 120
Query: 660 ttgatggaacaaacatatgaaatttataccggagatcaggataactatgatttcaaaagg 719
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 ttgatggaacaaacatatgaaatttataccggtgatcaggataactatgatttcaaaagg 180
Query: 720 acgagacacatgggtttttctggtgccgcacttggtgtgctatgtcaccactggtacaaa 779
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 181 acgagacacatgggcttttctggtgctgcacttggtgtgctatgtcaccactggtacaaa 240
Query: 780 gtgttagataaggttattattggtaaaacattcaacatggttactaagaaattgcttcta 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgttagataaggttattattggtaaaacattcaacatggttactaagaaattgcttcta 300
Query: 840 gatcaatttatattttcacccataatgatagtaacattgttcggtagtttagcattattc 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatcaatttatattttcacccataatgatagtaacattgttcggtagtttagcattattc 360
Query: 900 gaaaaagatcctgtagctaattttaaagaggaagttagagacaagtttacaactttgtat 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaaaaagatcctgtagctaattttaaagaggaagttagagacaagtttacaactttgtac 420
Query: 960 caagcggagtggatggtgtggccgccggcacagattataaatttttatttcctaccaact 1019
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 421 caagcggagtggatggtgtggccgccagcacagattataaatttttatttcctaccaact 480
Query: 1020 agatttagagttttatatgacaacactatatccttaggatatgacgtatatacctcacag 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agatttagagttttatatgacaacactatatccttaggatatgacgtatatacctcacag 540
Query: 1080 gttaagcacaataagtcacttaaaaagtaatactaccattttttttttgttataatttaa 1139
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 541 gttaagcacaataagtcacttaaaaagtaatactacca--ttttttttgttataatttaa 598
Query: 1140 ctggtcttttaaatagattataacataatatgtatgtacaaactttacaacacatccaga 1199
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ccggtcttttaaatagattataacataatatgtatgtacaaactttacaacacatccaga 658
Query: 1200 cggttctgtaatattattgtaatatttgta 1229
| ||||||||||||||||||||||||||||
Sbjct: 659 cagttctgtaatattattgtaatatttgta 688
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 295,545
Number of extensions: 7146
Number of successful extensions: 7146
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 7144
Number of HSP's successfully gapped: 1
Length of query: 1609
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1592
Effective length of database: 8,119,229
Effective search space: 12925812568
Effective search space used: 12925812568
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)