BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11139 (UTR included)
(1972 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01042A2B02 1251 0.0
>BF01042A2B02
Length = 696
Score = 1251 bits (631), Expect = 0.0
Identities = 652/662 (98%)
Strand = Plus / Plus
Query: 500 gatgttactgactttaaaaactcttcaacaacaaacttttcagatagaaatagaccctca 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 gatgttactgactttaaaaactcttcaacaacaaacttttcagatagaaatagaccctca 94
Query: 560 agagactgtcaaagcgctgaagcttaaaattgaagtggaaaaaggtaaagattatgcggc 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 agagactgtcaaagcgctgaagcttaaaattgaagtggaaaaaggtaaagattatgcggc 154
Query: 620 agacaatcaaagacttatttatgcgggtaagattcttctcgatgataataaactgcatac 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 agacaatcaaagacttatttatgcgggtaagattcttctcgatgataataaactgcatac 214
Query: 680 gtataatatagatgaaaagaaattcatcgttatcatggtgacaaaaccgaaaacttccga 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtataatatagatgaaaagaaattcatcgttatcatggtgacaaaaccgaaaacttccga 274
Query: 740 taatcaacaagcgtcgtcgacctcggcgccagaagccggggaaagtgcgtcaactgaaag 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 taatcaacaagcgtcgtcgacctcggcgccagaagccggggaaagtgcgtcaactgaaag 334
Query: 800 cggcgacggcaaaagtaaagtggtcgaagaaaaaccaaaacctcagcctgcagcggaacc 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cggcgacggcaaaagtaaagtggtcgaagaaaaaccaaaacctcagcctgcagcggaacc 394
Query: 860 tgagcgtgcatctgaaccaccagtaacatcaaatgagccagattttgaatcaacagtgca 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgagcgtgcatctgaaccaccagtaacatcaaatgagccagattttgaatcaacagtgca 454
Query: 920 aagcattatggatatgggctataatagacaacaagtagaacaagctctccgtgcttcatt 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aagcattatggatatgggctataatagacaacaagtagaacaagctctccgtgcttcatt 514
Query: 980 taataatcgtgaaagagctgtagaatatctcataacaggaatccctgaagagctacttca 1039
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 515 taataatcgtgaaagagctgtagaatatctcataactggaatccctgaagagctacttca 574
Query: 1040 agaacaggaagctgaagaaagtgctgatgaagaccccttgggctttcttcgggatcaacc 1099
||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 575 agaacaggaagctnnnnnaagtgctgatgaagacccctnnnnctttcttcgggatcaacc 634
Query: 1100 acagtttcaacaaatgcgtgcagtgattcaacagaatcctaatttactgaatactgtgtt 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 acagtttcaacaaatgcgtgcagtgattcaacagaatcctaatttactgaatactgtgtt 694
Query: 1160 gc 1161
||
Sbjct: 695 gc 696
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 284,098
Number of extensions: 6205
Number of successful extensions: 6205
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 6204
Number of HSP's successfully gapped: 1
Length of query: 1972
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1955
Effective length of database: 8,119,229
Effective search space: 15873092695
Effective search space used: 15873092695
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)