BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11242 (UTR included)
(2581 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01041A2F11 1402 0.0
BF01038B2A10 329 1e-89
>BF01041A2F11
Length = 754
Score = 1402 bits (707), Expect = 0.0
Identities = 740/752 (98%)
Strand = Plus / Plus
Query: 1246 gagtcccggtgggcgtggaacacgtgccgtatcagagagtcgcctcacttgacggagacg 1305
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3 gagtgccggtgggcgtggaacacgtcccgtatcagagagtcgcctcacttgacggagacg 62
Query: 1306 gagacaggatcgtctactattacgttgacaatgatgaaaaaatgcatctcttggacggtg 1365
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 63 gagataggatcgtctactactatgttgacaatgatgaaaaaatgcatctcttggacggtg 122
Query: 1366 atcgcatagccacgttgctcgccagttatataacggaactgctcggcacctgcggagcgg 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 atcgcatagccacgttgctcgccagttatataacggaactgctcggcacctgcggagcgg 182
Query: 1426 accagctgaagctaggcctagtacagacagcatacgccaacggagcctccaccaaatata 1485
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 183 accagctgaagctaggcctagtacaaacagcatacgccaacggagcctccaccaaatata 242
Query: 1486 ttacagaggaattgaaaatcccggtgtcgtgtgtgaagaccggtgtcaaaaatcttcatc 1545
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttacagaggaactgaaaatcccggtgtcgtgtgtgaagaccggtgtcaaaaatcttcatc 302
Query: 1546 acgaggccttgaagtatgacatcgggatatattttgaagctaacggtcacggtacggtgg 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 acgaggccttgaagtatgacatcgggatatattttgaagctaacggtcacggtacggtgg 362
Query: 1606 tttatagcagggaagcgaaaaatacactcaagaaaatagacgaggacggagacgctgaac 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tttatagcagggaagcgaaaaatacactcaagaaaatagacgaggacggagacgctgaac 422
Query: 1666 aaaggaaatcggcccaaatattattagacttcatcgacatgaccaatgagacggtcggag 1725
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaaggaagtcggcccaaatattattagacttcatcgacatgaccaatgagacggtcggag 482
Query: 1726 acgccatatcagatttattcctagtggaaactgtactgtgtgcgaggggtctagacatta 1785
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 acgccatatcagatttattcctagtggaaactgtactgtgtgcgaggggtctagacattg 542
Query: 1786 ctggatgggagaacacctaccgagacctccccagcagacagcttaaagtcaccgtacagg 1845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctggatgggagaacacctaccgagacctccccagcagacagcttaaagtcaccgtacagg 602
Query: 1846 atcgtaacgcgattcagacaacggatgctgagaggagatgcatctctccggaaggtttac 1905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 atcgtaacgcgattcagacaacggatgctgagaggagatgcatctctccggaaggtttac 662
Query: 1906 aggagaggattgatgagatcgtgtcagaggtcaacagcgggagagccttcgtgagaccat 1965
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 663 aggagaggattgatgagatcgtgtcagnnntcaacagcgggagagccttcgtgagaccat 722
Query: 1966 cgggcactgaggatatagtgagggtgtacgct 1997
||||||||||||||||||||||||||||||||
Sbjct: 723 cgggcactgaggatatagtgagggtgtacgct 754
>BF01038B2A10
Length = 829
Score = 329 bits (166), Expect = 1e-89
Identities = 182/186 (97%), Gaps = 1/186 (0%)
Strand = Plus / Plus
Query: 2396 actagtctgtaaacggttcaacgcgtaactagtctggcagcttgtatgtgttactgattt 2455
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actagtctgtaaacggtacaacgcgtaactagtctggcagcttgtatgtgttactgattt 60
Query: 2456 ggtcatagctattacatctctacgtaacctgctctctgcatatttttttattattattaa 2515
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 61 ggtcatagctattacatctctacgtaacctgctctctgcata-ttttttattattattaa 119
Query: 2516 ttatttagtcaaataatagtattttacattttttattctcaaccgtattctaaatacatt 2575
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 120 ttatttagttaaataatagtattttacattttttattctcaaccgtattcaaaatacatt 179
Query: 2576 tatgaa 2581
||||||
Sbjct: 180 tatgaa 185
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 300,810
Number of extensions: 11296
Number of successful extensions: 11296
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 11295
Number of HSP's successfully gapped: 2
Length of query: 2581
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2564
Effective length of database: 8,119,229
Effective search space: 20817703156
Effective search space used: 20817703156
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)