BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11421 (UTR included)
(4204 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01012A1E04 100 4e-20
BF01012A1B09 86 5e-16
BF01056A1B08 76 5e-13
BF01025B2E05 76 5e-13
>BF01012A1E04
Length = 841
Score = 99.6 bits (50), Expect = 4e-20
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 157 aaatccgcgtagtgtatccgaaaatatattagtttcatttaaatgaatttaaatgacgaa 216
||||||||||||| |||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 545 aaatccgcgtagtatatccgaaaatatattagtttcatttaaatgaataaaactcgcgaa 604
Query: 217 agtcttagatctca 230
||||||||||||||
Sbjct: 605 agtcttagatctca 618
>BF01012A1B09
Length = 841
Score = 85.7 bits (43), Expect = 5e-16
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 157 aaatccgcgtagtgtatccgaaaatatattagtttcatttaaatgaatttaaatgacgaa 216
||||||||||||||||||||||| |||||||||||||||||||||||| || | |||
Sbjct: 778 aaatccgcgtagtgtatccgaaa-tatattagtttcatttaaatgaataaaactcgcgac 720
Query: 217 agtcttagatctcat 231
|||||||||||||||
Sbjct: 719 agtcttagatctcat 705
>BF01056A1B08
Length = 761
Score = 75.8 bits (38), Expect = 5e-13
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 174 ccgaaaatatattagtttcatttaaatgaatttaaatgacgaaagtcttagatctcat 231
||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 153 ccgaaaatatattagtttcatttaaatgaataaaactcgcgaaagtcttagatctcat 96
>BF01025B2E05
Length = 759
Score = 75.8 bits (38), Expect = 5e-13
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 171 tatccgaaaatatattagtttcatttaaatgaatttaaatgacgaaagtcttagatctca 230
|||||||||||||| ||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 59 tatccgaaaatatactagtttcatttaaatgaataaaactcgcgaaagtcttagatctca 118
Query: 231 tt 232
||
Sbjct: 119 tt 120
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 415,159
Number of extensions: 7182
Number of successful extensions: 7182
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 7177
Number of HSP's successfully gapped: 4
Length of query: 4204
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 4186
Effective length of database: 8,109,745
Effective search space: 33947392570
Effective search space used: 33947392570
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)