BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11483 (UTR included)
(1489 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01025B2G10 819 0.0
BF01037A2A03 394 e-109
BF01057A1F12 72 3e-12
>BF01025B2G10
Length = 739
Score = 819 bits (413), Expect = 0.0
Identities = 488/511 (95%), Gaps = 14/511 (2%)
Strand = Plus / Plus
Query: 96 atacactgccggccaaaagtttgagaccacaagttaaaatattatttctttataaaatgt 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atacactgccggccaaaagtttgagaccacaagttaaaatattatttctttataaaatgt 300
Query: 156 gttataaatacatagtatgataaacaattaagttaacacctaca-atacaatggacttta 214
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 301 gttataaatacatagtatgataaacaattaagttaacacctgcgtatacaatggacttta 360
Query: 215 actacttttcgaagccatcatttctatttatttttatgttatcatcgtacaaaggtcttt 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 actacttttcgaagccatcatttctatttatttttatgttatcatcgtacaaaggtcttt 420
Query: 275 tgtctagaaacatcaatgggcgccgcgtgcggaccgcgcgctgaagtcattgtaatatta 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgtctagaaacatcaatgggcgccgcgtgcggaccgcgcgctgaagtcattgtaat---- 476
Query: 335 ttattgctgaatattattcat-tatttgggctttgttttgtgtaaatagagttttaggaa 393
|| | |||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 477 -------tgca-attaataatgtatttgggctttgttttgtgtaaatagagttttaggaa 528
Query: 394 attttaacttccctaaaacactgtgaacacctgactttccatggagtaaatatttctcaa 453
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 529 attttaacttccctaaaacactgtgaacacctgagtttccatggagtaaatatttctcaa 588
Query: 454 tcttggttagtctgagctcgtcgttcttacactgaagacatctcattatgggaaaagtac 513
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 589 tcttggttagtctgagctcgtcgttcttacagtgaagacatcttattatgggaaaagtac 648
Query: 514 gccaaattagcggtgaaactcgtgctgttatcgttgctttacacaacgaaggcaaatctg 573
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 649 gccaaattagcggtgaaactcgtgctgtcatcgttgctttacacaacgaaggcaaatctg 708
Query: 574 aacgtgcgattgctacccagctcaagttgtc 604
|||||||||||||||||||||||||||||||
Sbjct: 709 aacgtgcgattgctacccagctcaagttgtc 739
>BF01037A2A03
Length = 797
Score = 394 bits (199), Expect = e-109
Identities = 215/219 (98%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 107 gccaaaagtttgagaccacaagttaaaatattatttctttataaaatgtgttataaatac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gccaaaagtttgagaccacaagttaaaatattatttctttataaaatgtgttataaatac 179
Query: 167 atagtatgataaacaattaagttaacacctaca-atacaatggactttaactacttttcg 225
|||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct: 178 atagtatgataaacaattaagttaccacctgcgtatacaatggactttaactacttttcg 119
Query: 226 aagccatcatttctatttatttttatgttatcatcgtacaaaggtcttttgtctagaaac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 aagccatcatttctatttatttttatgttatcatcgtacaaaggtcttttgtctagaaac 59
Query: 286 atcaatgggcgccgcgtgcggaccgcgcgctgaagtcat 324
|||||||||||||||||||||||||||||||||||||||
Sbjct: 58 atcaatgggcgccgcgtgcggaccgcgcgctgaagtcat 20
>BF01057A1F12
Length = 801
Score = 71.9 bits (36), Expect = 3e-12
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 561 gaaggcaaatctgaacgtgcgattgctacccagctcaagttgtcgaagacttgtgttcat 620
||||||||||||||||||| |||||| | || |||||||| ||||||||||||||||||
Sbjct: 397 gaaggcaaatctgaacgtgagattgcatctcaactcaagttatcgaagacttgtgttcat 338
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 203,751
Number of extensions: 9328
Number of successful extensions: 9328
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 9326
Number of HSP's successfully gapped: 4
Length of query: 1489
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1472
Effective length of database: 8,119,229
Effective search space: 11951505088
Effective search space used: 11951505088
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)