BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11661 (UTR included)
(2623 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01062A1B01 462 e-129
BF01023A2A12 115 4e-25
BF01056B1D02 80 2e-14
>BF01062A1B01
Length = 807
Score = 462 bits (233), Expect = e-129
Identities = 251/257 (97%)
Strand = Plus / Plus
Query: 2367 ttttttttaatattaataaagtttgtttatacatcatcatcattatcagcccatcggtgc 2426
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct: 39 ttttttttaatattaataaagtttgtttatacatcatcagcatcatcagcccatcagtgc 98
Query: 2427 tcactgctgagcaaaagcctcttcatggagaaggtcagcattgaccaccgagctcgctca 2486
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 99 tcattgctgagcaaaagcctcttcatggagaaggttagcattgaccaccgagctcgctca 158
Query: 2487 aggcggattggcgattccaaacttctaattttaaattacaagtccaggtttcctcgcgat 2546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aggcggattggcgattccaaacttctaattttaaattacaagtccaggtttcctcgcgat 218
Query: 2547 gtttcccttcacagtacattacttcgtaataatcttccttcgctctgggatgtttaacag 2606
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 219 gtttcccttcacagtacattacttcgaaataatcttccttcgctctgggatgtttaacag 278
Query: 2607 aaacatcaattctatat 2623
|||||||||||||||||
Sbjct: 279 aaacatcaattctatat 295
>BF01023A2A12
Length = 723
Score = 115 bits (58), Expect = 4e-25
Identities = 140/166 (84%), Gaps = 6/166 (3%)
Strand = Plus / Minus
Query: 2399 atcatcatcattatcagcccatcggtgctcactgctgagcaaaagcctctt----catgg 2454
||||||||||| ||||||| ||||| ||||||||||||||||| ||||||| |||||
Sbjct: 348 atcatcatcatcatcagcctatcggagctcactgctgagcaaaggcctcttatcacatgg 289
Query: 2455 agaaggtcag--cattgaccaccgagctcgctcaaggcggattggcgattccaaacttct 2512
||||||| || |||| | |||| ||||||||||||| |||||| |||| ||||||| |
Sbjct: 288 agaaggttagagcattaatcaccacgctcgctcaaggctgattggtgatttcaaacttat 229
Query: 2513 aattttaaattacaagtccaggtttcctcgcgatgtttcccttcac 2558
||||| |||||| ||| |||||||||||| ||| ||| |||||||
Sbjct: 228 aatttgaaattataagaccaggtttcctcacgacgttctccttcac 183
>BF01056B1D02
Length = 778
Score = 79.8 bits (40), Expect = 2e-14
Identities = 134/163 (82%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 2399 atcatcatcattatcagcccatcggtgctcactgctgagcaaaagcctcttcatgga-ga 2457
|||||||| || ||||||| ||||| || |||||||||||||| |||||||| | ||
Sbjct: 746 atcatcattatcatcagcctatcggagcccactgctgagcaaaggcctcttctcacatga 687
Query: 2458 aggtcag--cattgaccaccgagctcgctcaaggcggattggcgattccaaacttctaat 2515
|||| || |||| |||||| ||| ||||||| ||| ||||||||| ||| ||| ||||
Sbjct: 686 aggttagagcattaaccaccacgcttgctcaagacgggttggcgatttcaatcttataat 627
Query: 2516 tttaaattacaagtccaggtttcctcgcgatgtttcccttcac 2558
|| |||||| ||| |||||||||||| ||| |||| |||||||
Sbjct: 626 ttgaaattataagaccaggtttcctcacgacgttttccttcac 584
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 316,463
Number of extensions: 6498
Number of successful extensions: 6498
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 6496
Number of HSP's successfully gapped: 3
Length of query: 2623
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2606
Effective length of database: 8,119,229
Effective search space: 21158710774
Effective search space used: 21158710774
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)