BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11679 (UTR included)
(2197 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01015A1A07 327 4e-89
BF01018A2H04 72 4e-12
>BF01015A1A07
Length = 382
Score = 327 bits (165), Expect = 4e-89
Identities = 191/200 (95%), Gaps = 2/200 (1%)
Strand = Plus / Plus
Query: 464 aggtgatcaaatacaaaaaattgcaataaataatacaatggaacagtgtaaagaaaaact 523
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 183 aggtgatcaaatacaaaaaattgcaatacataatacaatggaacagtgtaaagaaaaact 242
Query: 524 ttatccaaactgtgacaaccaagtctggctgcggtcttgtgaagttgaagtaaatgagcc 583
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 243 ttatccaaactgagacaaccaagtctggctgccgtcttgtgaagttgaagtaaatgagcc 302
Query: 584 gataactggcgaaattacaggagaatttccaagatgggtcc--gaggaagcctactccgt 641
||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct: 303 gataactggcgaaattacaggagaatttcnnagatgggtccgagagnnagcctactccgt 362
Query: 642 aacggtcccgggtctttaaa 661
||||||||||||||||||||
Sbjct: 363 aacggtcccgggtctttaaa 382
Score = 278 bits (140), Expect = 4e-74
Identities = 164/173 (94%)
Strand = Plus / Plus
Query: 201 tcccggtttatttttggcaatgtgattagtctactaccgatgtttacgaagcattttttt 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tcccggtttatttttggcaatgtgattagtctactaccgatgtttacgaagcattttttt 73
Query: 261 gataattctatacgaaatatgattgaagtgctctgaaaactgccaagtcgatatttattc 320
|||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct: 74 gataattctatacgaaatatgattgaagtgctctgaaaactgccaagtcgcttatttttc 133
Query: 321 atatcaaaacgcagacttttcatataacgcagactgctaggttcagtagaggt 373
||||||||||||| ||||||||||||||| |||||||||||||||| ||||
Sbjct: 134 atatcaaaacgcaancttttcatataacgcnnactgctaggttcagtacaggt 186
>BF01018A2H04
Length = 679
Score = 71.9 bits (36), Expect = 4e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 2142 ttttcatctcatctgcccgtgatcacggtcgctgcgaagtaaccgaaa 2189
||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 252 ttttcatctcatctgcccgtgatcacggttactgcaaagtaaccgaaa 299
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 268,724
Number of extensions: 5077
Number of successful extensions: 5077
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 5076
Number of HSP's successfully gapped: 3
Length of query: 2197
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2180
Effective length of database: 8,119,229
Effective search space: 17699919220
Effective search space used: 17699919220
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)