BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11741 (UTR included)
(3160 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01011A1C07 1503 0.0
>BF01011A1C07
Length = 787
Score = 1503 bits (758), Expect = 0.0
Identities = 779/786 (99%)
Strand = Plus / Minus
Query: 1803 gcgtcaccaggtcgtcgtaaattggtgaggaatcaatcggagggctcgcccaaaagtggt 1862
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gcgtcgccaggtcgtcgtaaattggtgaggaatcaatcggagggctcgcccaaaagtggt 728
Query: 1863 gaaacttcagccgagttgagaagattagtcgacgcaccgacgcgaagacggagcgaatac 1922
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 727 gaaacttcagccgagttgagaagattagtcgacgcaccggcgcgaagacggagcgaatac 668
Query: 1923 ggagtcataggagacaccacgtgcatgggtgaccataagccgatatacctccgcgtgatg 1982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ggagtcataggagacaccacgtgcatgggtgaccataagccgatatacctccgcgtgatg 608
Query: 1983 ctgcagtgtgaccgaggtatcgtacagtgttgtgaccacctgccttgtgccttatgcgtg 2042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctgcagtgtgaccgaggtatcgtacagtgttgtgaccacctgccttgtgccttatgcgtg 548
Query: 2043 tgcgcactcaattacaccaaaaaaccccaaaaactgccccgcctacctacagaccccgat 2102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgcgcactcaattacaccaaaaaaccccaaaaactgccccgcctacctacagaccccgat 488
Query: 2103 ctatatgctaaaaaaactattcagagttacgatcactcgagcagccacccggagacgctg 2162
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctatatgctaaaaaaactatacagagttacgatcactcgagcagccacccggagacgctg 428
Query: 2163 tccgacgaacagagacttagacgcaccagaaccggctcgctcaatgacaaaatatttcgt 2222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tccgacgaacagagacttagacgcaccagaaccggctcgctcaatgacaaaatatttcgt 368
Query: 2223 attccgaacgttaaaataacctgcgccgactccatttacaacggcatctttgtcaacgac 2282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 attccgaacgttaaaataacctgcgccgactccatttacaacggcatctttgtcaacgac 308
Query: 2283 atcgacagttcgttattgagtccgagccgatgtctgggtccgtacaccccggagagcgtg 2342
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 307 atcgacagttcgttattgagtccgagccgatgtctgggtccgtacactccggagagcgtg 248
Query: 2343 gactctcacacgcccaccgctgacgtgtccaacggttcggacgaccgtgacgtcatagac 2402
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gactctcacacgcccactgctgacgtgtccaacggttcggacgaccgtgacgtcatagac 188
Query: 2403 gctgtcgacaaacagaaatacagtcacgacaggagcgtctccccgacgcagctgaagtcc 2462
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gctgtcgacaaaccgaaatacagtcacgacaggagcgtctccccgacgcagctgaagtcc 128
Query: 2463 cgcttagaccggctcctgagcgataaggagaaacaaagcaacgatagcacgccggagata 2522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 127 cgcttagaccggctcctgagcgataaggagaaacaaagcaacgatagcacgccggaaata 68
Query: 2523 cagaggcggaacagcaatgagtcgtgtaagtcggacggcggcaagggattgtgctgtctg 2582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 cagaggcggaacagcaatgagtcgtgtaagtcggacggcggcaagggattgtgctgtctg 8
Query: 2583 gcgctg 2588
||||||
Sbjct: 7 gcgctg 2
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 294,674
Number of extensions: 5091
Number of successful extensions: 5091
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 5091
Number of HSP's successfully gapped: 1
Length of query: 3160
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3142
Effective length of database: 8,109,745
Effective search space: 25480818790
Effective search space used: 25480818790
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)