BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11776 (UTR included)
(1768 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01027A1A05 1100 0.0
BF01062A1H02 74 8e-13
BF01049B2H03 68 5e-11
>BF01027A1A05
Length = 628
Score = 1100 bits (555), Expect = 0.0
Identities = 561/563 (99%)
Strand = Plus / Plus
Query: 477 aatattgacagagaaaatttaataatgaccgacgaatatgctgccgtaaaaagaggaaag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aatattgacagagaaaatttaataatgaccgacgaatatgctgccgtaaaaagaggaaag 125
Query: 537 ttgattcttaaaggcgacaaacctaaagcaaagaagcgtaaacataaaaagaaagataaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ttgattcttaaaggcgacaaacctaaagcaaagaagcgtaaacataaaaagaaagataaa 185
Query: 597 acagaagaaagtacagtagatgaagattgcattaaacatggtggatggtggaaggcacag 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 acagaagaaagtacagtagatgaagattgcattaaacatggtggatggtggaaggcacag 245
Query: 657 agaatcgaagacatttctggatcaatagctattgagtttggtaacaattgctatgtttcg 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 agaatcgaagacatttctggatcaatagctattgagtttggtaacaattgctatgtttcg 305
Query: 717 gctttggacaatggtctatttacaatcggggctccacatgatgaaggaagtggaccatcc 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gctttggacaatggtctatttacaatcggggctccacatgatgaaggaagtggaccatcc 365
Query: 777 cctgaagaaatctttacagcatttccggccggagagaacaagtttgctttgaaatcaggt 836
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 366 cctgaagaaatctttacagcatttccggctggagagaacaagtttgctttgaaatcaggt 425
Query: 837 tatgggaagtacctgggtgtgactaaagaaggaactgtgattggaagatcagatgctgtt 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tatgggaagtacctgggtgtgactaaagaaggaactgtgattggaagatcagatgctgtt 485
Query: 897 ggaactatggaacaatgggaacctgtgtttgaagacggcaaaaccgccatactgagttca 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggaactatggaacaatgggaacctgtgtttgaagacggcaaaaccgccatactgagttca 545
Query: 957 gtaaacaagttcatgtcagtgaatgattctgagtcagtggtggcagtgagtactactgct 1016
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gtaaacaagttcatgtcggtgaatgattctgagtcagtggtggcagtgagtactactgct 605
Query: 1017 ggtcacagtgagacttgctgcat 1039
|||||||||||||||||||||||
Sbjct: 606 ggtcacagtgagacttgctgcat 628
>BF01062A1H02
Length = 876
Score = 73.8 bits (37), Expect = 8e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 136 ctttcgcaagtattcatttaaataaaactaatatttt 172
|||||||||||||||||||||||||||||||||||||
Sbjct: 195 ctttcgcaagtattcatttaaataaaactaatatttt 231
>BF01049B2H03
Length = 832
Score = 67.9 bits (34), Expect = 5e-11
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 120 ataatgagatgtaagactttcgcaagtattcatttaaataaaactaatattttt 173
|||||||||| ||||| ||| || ||||||||||||||| ||||||||||||||
Sbjct: 355 ataatgagatctaagattttagcgagtattcatttaaatgaaactaatattttt 302
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 220,750
Number of extensions: 4746
Number of successful extensions: 4746
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4746
Number of HSP's successfully gapped: 3
Length of query: 1768
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1751
Effective length of database: 8,119,229
Effective search space: 14216769979
Effective search space used: 14216769979
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)